DRSC/TRiP Functional Genomics Resources

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Protein Alignment pit and ddx54

DIOPT Version :10

Sequence 1:NP_524446.3 Gene:pit / 42595 FlyBaseID:FBgn0266581 Length:680 Species:Drosophila melanogaster
Sequence 2:XP_002934380.1 Gene:ddx54 / 733994 XenbaseID:XB-GENE-1011576 Length:847 Species:Xenopus tropicalis


Alignment Length:601 Identity:167/601 - (27%)
Similarity:282/601 - (46%) Gaps:101/601 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   132 QQEDEDEEEPVPAKKTKLLPNKSKAQNG--------KPAKDDEPFTVESSLAALDYRDSDDRSFA 188
            |.::.||.:.| ..:.|..|.|   ::|        ..|..|........:.|.:.:......|.
 Frog    16 QNQESDESDTV-GFRVKAAPQK---EDGVKLPAFPTADATSDTELDTREMVRAQNKKKKKSGGFQ 76

  Fly   189 SLKGAVSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELINKLR 253
            |:  .:|....:.:.:.|:...|.||.|.:..:|.|:|:|..|:||||||..||||..|   ||:
 Frog    77 SM--GLSYPVFKGVMKKGYKVPTPIQRKVIPVILDGKDVVAMARTGSGKTACFLIPMFE---KLK 136

  Fly   254 -FMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKGINILVATP 317
             ...:.|...:|:||||||::||....|||.........|::||...:.:...|.:..:|::|||
 Frog   137 AHSAQTGVRGLILSPTRELALQTLKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATP 201

  Fly   318 GRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLFSATQTARIEAL 382
            |||: |:....:...:.::.::.||.||:.|:||.|:|::||:.||:.|||:|||||....:...
 Frog   202 GRLM-HVAIEMNLKLRTVEYVVFDEADRLFEMGFAEQLQEIISRLPETRQTLLFSATLPKMLLEF 265

  Fly   383 SKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVLFTFLK--KNRKKKVMVFFSSCMS 445
            ::..| :||:.:.:  :.||...|.|:..:.....|.:..||...|:  ...:::.::|.::...
 Frog   266 ARAGL-TEPVLIRL--DVDTKLSDQLKLSFFNVRVEDKPAVLLHLLRCVVKPQEQTVIFVATKHH 327

  Fly   446 VKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGLDIPQVDWIVQYDP 510
            .:|..||.:...:|.:.|:....||.|......|.:.:...||.|||||||:|||.:|.::.|:.
 Frog   328 AEYLRELLDMQGIPCSHIYSALDQTARKINLGLFLHGKVRALLVTDVAARGIDIPMLDNVINYNF 392

  Fly   511 PDDPREYIHRVGRTARGSGTSGHALLLMRPEELGFL--------RYLKAA--------------- 552
            |...:.::|||||.|| :|.||.|..|:.|:|:.::        |.||.|               
 Frog   393 PPKAKLFLHRVGRVAR-AGRSGTAYSLIAPDEIPYVYDLHLFLGRPLKLATAQMMETGADTDGVL 456

  Fly   553 -KVPLNEFEFSWQKIADIQ-----------LQLEKLIAKNYFLNQSAKEAFKSYVRAYDS---HQ 602
             :||        |.:.|.:           |:|:.       |:..|:.|:|.|:::..:   ..
 Frog   457 GRVP--------QSLIDDEDALLITDRERSLELQN-------LHNVAENAYKQYIKSRPTPSPES 506

  Fly   603 LKQIFNVNTLDLQAVAKSFGFL-VPPVVDLKVGAAKRERPEKRVGGGGFGFYKKMNEGSASKQRH 666
            :|::.:.|          :..| |.|:...::|..:.:| .|.|  .|...||       ||...
 Frog   507 IKRVKDAN----------YNLLGVHPLFWSQLGEEEMQR-LKFV--DGIKSYK-------SKATI 551

  Fly   667 FK--QVNRDQAKKFMR 680
            |:  ..|:..|.:.||
 Frog   552 FEINATNKTNASEVMR 567

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pitNP_524446.3 DEADc_DDX18 198..395 CDD:350700 72/197 (37%)
SF2_C_DEAD 408..537 CDD:350174 41/130 (32%)
DUF4217 570..627 CDD:464056 11/71 (15%)
ddx54XP_002934380.1 DEADc_DDX54 73..277 CDD:350717 75/210 (36%)
SF2_C_DEAD 288..419 CDD:350174 41/131 (31%)
DBP10CT 679..739 CDD:462373
Blue background indicates that the domain is not in the aligned region.

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