DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pit and ddx24

DIOPT Version :9

Sequence 1:NP_001287459.1 Gene:pit / 42595 FlyBaseID:FBgn0266581 Length:680 Species:Drosophila melanogaster
Sequence 2:XP_003200454.2 Gene:ddx24 / 553462 ZFINID:ZDB-GENE-100716-4 Length:803 Species:Danio rerio


Alignment Length:822 Identity:217/822 - (26%)
Similarity:337/822 - (40%) Gaps:268/822 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 EKLLMKKIVKREKMKKE------LSQKKGNKNAQKQEPPK-------QNGNKPSKKPEKLSKKHV 56
            |:|....:|:.||...|      .||||...|.:::...:       .:|.||.||.:|.:|:  
Zfish    52 EELTDYSLVEPEKALTEHVQTERRSQKKRKTNEERRSEDEDAAALEDDSGGKPEKKKKKKNKQ-- 114

  Fly    57 AKDEDDDLEED---FQEAPLP---------KKKQQKQPPKKQQIQVANSDSESDDDEQEDEADED 109
             |:|::.|||:   .:|:|.|         |||::|:..||::       .:.:|.||.:|    
Zfish   115 -KEEEETLEEEQIPAEESPEPTTETPQTNKKKKKRKRKRKKKK-------KQEEDQEQPEE---- 167

  Fly   110 SDLDEVAEVDEEDVDSGSEDDDQQEDEDEEEPVPAKKTKLLPNKSKAQNGKPAKDDEPFTVESSL 174
                      |....:|:|         .|..|.|     .|.||:..:....:...|..|.|  
Zfish   168 ----------ERSAAAGAE---------AESAVSA-----APQKSRHWSRASLEAPGPADVSS-- 206

  Fly   175 AALDYRDSDDRSFASLKGAVSEATLRAIKEMGFTEMTEIQSKSLTPLLKGR-DLVGAAQTGSGKT 238
                :||.          .|.|..|||:..:||:..|.||:..|.|.::.| |::|||:||||||
Zfish   207 ----WRDL----------LVPEPVLRALAVLGFSAPTAIQALVLPPAIRDRLDILGAAETGSGKT 257

  Fly   239 LAFLIPAVELINKLRFM------------------------------------------------ 255
            |.|.||.:.:|.:.|..                                                
Zfish   258 LCFGIPMIHMILQWREQTEEHSTPERTHTPAQSLYLQEEHGEDDDDDDDDDEKKDDEVIDDDEGG 322

  Fly   256 ----------------PRNGTGV------IIISPTRELSMQTFGVLKELMAHHHHTY-------- 290
                            |...:||      ::::|||||::|        :.||....        
Zfish   323 AEGCSAPPDDPDGQNDPDPASGVCRPLLGLVLTPTRELAVQ--------VKHHIDAVAQFTGIKT 379

  Fly   291 GLVMGGSNRQVESEKLGKGINILVATPGRLLD-------HLQNSPDFLYKNLQCLIIDEVDRILE 348
            .:|:||...|.:...|.:...|::||||||.:       |||:     .:.|:||::||.||::|
Zfish   380 AIVVGGMAPQKQHRVLMRRPEIIIATPGRLWEMIREKHPHLQD-----LRQLRCLVLDEADRMVE 439

  Fly   349 IGFEEELKQIINLL-----PKRRQTMLFSATQT------ARI----------EALSKLALKSEPI 392
            .|...||:.::.||     ..||||.:||||.|      :|:          |..|||.|..|. 
Zfish   440 KGHFAELESLLELLNTSQFSSRRQTFVFSATLTLVHSLPSRLQQKKKKQRPAEQRSKLQLLMEK- 503

  Fly   393 YVGVHD-------NQDTATVDGLEQGYIVCPSEKRLLVLFTFLKKNRKKKVMVFFSSCMSVKYHH 450
             |||.|       .:..|||:.|.:..|.|..|.:.|.|:.||.:...:. |||.:|...:|..:
Zfish   504 -VGVRDKPKVIDLTRKQATVETLTETRISCTKEDKDLFLYYFLLQFPGRS-MVFANSIACIKRLY 566

  Fly   451 ELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGLDIPQVDWIVQYDPPDDPR 515
            .|.:.:|.....:|....|.:|.....:|......:||.|||||||||||.|..::.|..|....
Zfish   567 ALLHLLDCTPLMLHANMHQKQRLKNLERFAENTRCVLLTTDVAARGLDIPDVQHVIHYQVPRTSE 631

  Fly   516 EYIHRVGRTARGSGTSGHALLLMRPEELGFLRYL-------KAAKVPLNEFE----FSWQKIADI 569
            .|:||.|||||.: ..|.:|||:.|::|  |.|.       |:.::|:...|    .:.::..|:
Zfish   632 TYVHRSGRTARAT-REGLSLLLISPDDL--LNYRRICRTLDKSEELPVFPVESKCMAAVKERVDL 693

  Fly   570 QLQLEKLIAKNYFLNQSAKEAFKSYVRAYDSHQLKQIFNVNTLDLQAVAKSFGFLVPPVVDLKVG 634
            ..::||:   .||  .|.:....|:||     |..:..:::..|                :|.:|
Zfish   694 AHRIEKM---EYF--HSRQTQHNSWVR-----QAAEAMDIDVDD----------------ELLMG 732

  Fly   635 AAKRERPEKRVGGGGFGFYKKMNEGSASKQRHFKQVNRDQAK 676
            ::|.|..|:                   :|:..||:.|.|.|
Zfish   733 SSKGEDEER-------------------EQQREKQMLRKQLK 755

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pitNP_001287459.1 SrmB 186..677 CDD:223587 167/616 (27%)
DEADc 187..394 CDD:238167 84/313 (27%)
HELICc 408..537 CDD:238034 45/128 (35%)
DUF4217 569..627 CDD:290667 10/57 (18%)
ddx24XP_003200454.2 PTZ00424 204..676 CDD:185609 147/506 (29%)
P-loop_NTPase 207..472 CDD:304359 78/287 (27%)
Helicase_C 535..643 CDD:278689 39/108 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D973872at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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