DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pit and Rs1

DIOPT Version :9

Sequence 1:NP_001287459.1 Gene:pit / 42595 FlyBaseID:FBgn0266581 Length:680 Species:Drosophila melanogaster
Sequence 2:NP_001286188.1 Gene:Rs1 / 44087 FlyBaseID:FBgn0021995 Length:782 Species:Drosophila melanogaster


Alignment Length:688 Identity:194/688 - (28%)
Similarity:321/688 - (46%) Gaps:113/688 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 EDDDLEEDFQEAPLPKKKQQKQPPKKQQIQVANSDSESDDDEQED-------EADEDSDLDEV-- 115
            ||.|.|.::|...|..||..:   .::..:..:|..|.:.|..:|       :|...:| |::  
  Fly    24 EDSDAEVEYQPTKLRHKKVTE---FEKGFEFVSSVKEYNQDTWDDLMKYVKRKARTKTD-DKIAA 84

  Fly   116 -------AEVDEEDVDSGSEDDDQQEDEDEEEPVPAKKTKLLPNKSKAQNGKPAKDDEPFTVESS 173
                   ||....:...||| .|..|||.:.:.:..::.|    :||.:..|..::||....|..
  Fly    85 RLQKRGGAEAVAAEQSDGSE-IDLSEDELKHDNLRLREKK----ESKKKKKKAGEEDEEDEGEKM 144

  Fly   174 LAALDYRDSDDRSFASLKGAVSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKT 238
            ..| |..:::::..:..:..:|...:|||..:|:...|.||:.::...|.|||:.|.|.||:|||
  Fly   145 QFA-DTVEANEQITSFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKT 208

  Fly   239 LAFLIPAVELINKLRFMPRNG---TGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQ 300
            .|:::|.:|   :|.:.|.|.   |.|:::.|||||..|.:.|.|:|........||.:||.:.:
  Fly   209 AAYMLPTLE---RLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVK 270

  Fly   301 VESEKLGKGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKR 365
            .:...|.:..:|::||||||:||::|:|.|...:::.||:||.||:|:..|.|::|:|||...|.
  Fly   271 AQEAVLRQNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKT 335

  Fly   366 RQTMLFSATQTARIEALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEK---RLLVLFTF 427
            |||||||||.:.:::.|:.::| .:||.|.|::||..|.  .|.|.:|....:|   |..:|.:.
  Fly   336 RQTMLFSATMSEQVKDLAAVSL-DKPIKVFVNNNQQVAF--NLRQEFIRIREDKEGDREPILASL 397

  Fly   428 LKKNRKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTDV 492
            :.:......|||..:.......|.|...:.:....:||...|.:|..:..:|...:..:|:.|||
  Fly   398 ICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIATDV 462

  Fly   493 AARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMRPEELGFLR-YLKAAK--- 553
            |||||||..|..::.:..|.....|||||||||| :|.:|.::.|...:|...:: .:|.|:   
  Fly   463 AARGLDIVGVKTVINFVMPITTEHYIHRVGRTAR-AGRAGISVSLAGEKERKIVKDIIKNAESTI 526

  Fly   554 ----VP----------LNEFEFSWQKIADIQLQLEKLIAK--------------------NYFLN 584
                :|          |...|...|.|.| :.|.|:.:||                    .:|..
  Fly   527 KNRIIPPEIIEKYRNKLTSLEPEIQNILD-EEQAERQLAKTEQQLSKTERKLLGQTNERRGWFQT 590

  Fly   585 QSAKEAFKSYVRAYDSHQLKQIFNVNTLDLQAVAKSFGFLV---------------PPVVDLKVG 634
            :..:||.|.          :........|..:..|..|...               |||.||:..
  Fly   591 KQQREAEKD----------RLALTTGDEDKASGGKGKGKTAGKRKRPEYGGDGEDGPPVKDLEAK 645

  Fly   635 AAKRERPEKRVGGGGFGFYKKMNEGSASKQRHFKQVNR 672
            ..|:::.|.|         ||..| ..:|:|..|::.:
  Fly   646 RNKKKKEEPR---------KKTPE-QLAKERAMKEIEK 673

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pitNP_001287459.1 SrmB 186..677 CDD:223587 161/546 (29%)
DEADc 187..394 CDD:238167 80/209 (38%)
HELICc 408..537 CDD:238034 41/131 (31%)
DUF4217 569..627 CDD:290667 11/92 (12%)
Rs1NP_001286188.1 PTZ00424 148..537 CDD:185609 132/395 (33%)
DEADc 159..364 CDD:238167 80/208 (38%)
Helicase_C 393..498 CDD:278689 34/105 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45451710
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24031
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

Return to query results.
Submit another query.