DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pit and CG9630

DIOPT Version :9

Sequence 1:NP_001287459.1 Gene:pit / 42595 FlyBaseID:FBgn0266581 Length:680 Species:Drosophila melanogaster
Sequence 2:NP_649777.1 Gene:CG9630 / 40974 FlyBaseID:FBgn0037561 Length:613 Species:Drosophila melanogaster


Alignment Length:549 Identity:190/549 - (34%)
Similarity:285/549 - (51%) Gaps:72/549 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   185 RSFASL-KGAVSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVEL 248
            :.::|| |..:|:|.|:.::..||.:||.:|:.::..||..:|:...|.||||||||||:|.:|:
  Fly     4 KKWSSLDKPPLSDAVLQVVQSFGFQQMTPVQTAAIPLLLARKDVSAEAVTGSGKTLAFLVPMLEI 68

  Fly   249 INKLR----FMPRNGTGVIIISPTRELSMQTFGVLKELMAH---HHHTYGLVMGGSNRQVESEKL 306
            :.:..    :.|:. .|.::|||||||:.|...||.:.:.|   .|....|::||::.:.:...|
  Fly    69 LQRRHKETPWGPKE-IGALVISPTRELARQISEVLAQFLEHEDLEHLNQQLIVGGNSIEEDIATL 132

  Fly   307 GKGIN-ILVATPGRLLDHLQNSPDFL-----YKNLQCLIIDEVDRILEIGFEEELKQIINLLPKR 365
            .:... |||.|||||.|..|...|.|     .|:|:.|::||.||:|::||:..:..|:..||::
  Fly   133 RRETPCILVCTPGRLEDLFQRKGDDLNLAAQVKSLEFLVLDEADRLLDLGFKTSVNNILGYLPRQ 197

  Fly   366 RQTMLFSATQTARIEALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVLFTFLKK 430
            |:|.|||||||..:..|.:..|:: |:.|.|.:.....|...|:..|.:...|.:.:.|..||..
  Fly   198 RRTGLFSATQTTEVTDLIRAGLRN-PVLVSVKEKASVNTPARLQNFYRIVEPELKFVALLEFLSS 261

  Fly   431 NRK--KKVMVFFSSCMSVKYHHELFNYIDLP---VTSIHGKQKQTKRTTTFFQFCNAESGILLCT 490
            ...  .||||||.:|..|:|..|....: ||   |..||||.| .||.....:|.|....:||||
  Fly   262 PATVIGKVMVFFPTCACVEYWAEALPPL-LPKRTVLGIHGKMK-NKRANVVEKFRNTPQAVLLCT 324

  Fly   491 DVAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMRPEELGFLRYLKA-AKV 554
            ||.|||||:|:::|:||:|||.....::|||||||| .|..|:||:.:.|.|..::.:||. .||
  Fly   325 DVLARGLDVPEIEWVVQWDPPSTASSFVHRVGRTAR-QGNEGNALVFLLPSEDAYVHFLKINQKV 388

  Fly   555 PLNEF--------EFSWQKIADIQLQLEKLIAKNYFLNQSAKEAFKSYVRAYDSHQLKQIFNVNT 611
            .|.:.        :...:|:..:..||.:|.|.:..:......||.|:||||..|:...|..:..
  Fly   389 ELTKLLTEEAEDADREKKKLPAVLDQLHRLQAADKGVYDKGMRAFVSHVRAYTKHECSAILRLKD 453

  Fly   612 LDLQAVAKSFGFLVPPVVDLKVGAAKRERPE-KRVGGGGF---GF------------------YK 654
            |||..:|.::|.|..|           ..|| |...|||:   .|                  .|
  Fly   454 LDLGKMATAYGLLQLP-----------RMPELKNYQGGGYVAPAFEVDLSKLTYKNAQKEQVRQK 507

  Fly   655 KM----NEGS-ASKQRHFKQVNR-DQAKK 677
            ||    ..|| ..:::|.|:|.. ||.||
  Fly   508 KMETYEQTGSWPGQKQHKKRVESWDQTKK 536

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pitNP_001287459.1 SrmB 186..677 CDD:223587 188/546 (34%)
DEADc 187..394 CDD:238167 82/220 (37%)
HELICc 408..537 CDD:238034 58/133 (44%)
DUF4217 569..627 CDD:290667 19/57 (33%)
CG9630NP_649777.1 DEADc 6..226 CDD:238167 82/221 (37%)
DEXDc 22..232 CDD:214692 78/211 (37%)
HELICc 239..370 CDD:238034 58/133 (44%)
DUF4217 411..470 CDD:290667 20/69 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45451681
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D973872at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24031
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.950

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