DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pit and Dbp73D

DIOPT Version :9

Sequence 1:NP_001287459.1 Gene:pit / 42595 FlyBaseID:FBgn0266581 Length:680 Species:Drosophila melanogaster
Sequence 2:NP_476833.1 Gene:Dbp73D / 39871 FlyBaseID:FBgn0004556 Length:687 Species:Drosophila melanogaster


Alignment Length:684 Identity:175/684 - (25%)
Similarity:280/684 - (40%) Gaps:178/684 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 EKMKKELSQKKGNKNAQKQEPPKQNGNKPSKKPEKLSKKHVAKDEDDDLEEDFQEAPLPKKKQQK 80
            |.:|:   ||.|.:....::...|   |..||..|..:||.|        .:..|.|:.:|:.. 
  Fly    11 EDLKE---QKDGAQGTNNEDEILQ---KLLKKAAKRKRKHEA--------IEVVETPILEKETS- 60

  Fly    81 QPPKKQQIQVANSDSESDDDEQEDEADEDSDLDEVAEVDEEDVDS------GSEDDDQQEDEDEE 139
                    .|..|:|:   :||.:|.::..::     |.||||.|      |.:|.         
  Fly    61 --------DVKESESK---EEQVEEPEKPLEV-----VQEEDVPSNEFQVLGGDDS--------- 100

  Fly   140 EPVPAKKTKL---LPN---KSKAQNGKPAKDDEPFTVESSLAALDYRDSDDRSFASLKGAVSEAT 198
               .|||.|:   |||   ......|...:.:|......::..|||              :.:.|
  Fly   101 ---AAKKKKVQMQLPNWLAHPTIIEGGSLQPEEEVPASEAIDQLDY--------------LEKYT 148

  Fly   199 LRAIKEMGFTEMTEIQSKSL---------TPLLKGRDLVGAAQTGSGKTLAFLIPAVELIN---- 250
            .:|:|:|....:..:|.:.:         .|..:.||:..:|.|||||||||.||.|:|::    
  Fly   149 CQALKQMKIKRLFPVQKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAFAIPIVQLLSQRVD 213

  Fly   251 -KLRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKL-----GK- 308
             |:|        .:::.|..||::|.:.|:.||.:.......|:......:.|.|||     || 
  Fly   214 CKVR--------ALVVLPVAELALQVYRVISELCSKTELEVCLLSKQHKLEDEQEKLVEQYKGKY 270

  Fly   309 --GINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGF-------EEELKQIINLL-- 362
              ..:|:|.|||||:|||..:..|..|:|:.|:|||.|||::..|       :..:|:..:.|  
  Fly   271 YSKADIVVTTPGRLVDHLHATKGFCLKSLKFLVIDEADRIMDAVFQNWLYHLDSHVKETTDQLLA 335

  Fly   363 ---------------PKRRQTMLFSATQTARIEALSKLALKSEPIYVGV----------HDNQDT 402
                           .|:...:|||||.:...|.|..|.|....::..|          .:..||
  Fly   336 GTQAPLCYAELQASFGKQPHKLLFSATLSQDPEKLQDLRLFQPRLFATVLTMPVLKDATEEGADT 400

  Fly   403 -------------ATVDGLEQGYIVCPSEKRL--LVLFTFLKKNRKKKVMVFFSS---------C 443
                         .|...|.:.|  |.:|.||  |.:|..::|.:.|:.:.|.:|         .
  Fly   401 EALTDPGQFVGRYTTPAELTEQY--CVTELRLKPLTVFALVEKYKWKRFLCFTNSSDQATRLTFV 463

  Fly   444 MSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGLDIPQVDWIVQY 508
            :.|     ||......|:.:.|......|......|...:...|:|:|..|||:|:..||.::.|
  Fly   464 LKV-----LFQKYSTKVSELSGNLSAKVRNERLRDFAAGKINGLICSDALARGIDVADVDVVLSY 523

  Fly   509 DPPDDPREYIHRVGRTARGSGTSGHALLLMRPEELG-FLRYLKAAKVPLNEFEFSWQKIADIQ-- 570
            :.|.....|||||||||| :|..|.|:.::..:::. |.:.|..|...|.| |.......:||  
  Fly   524 ETPRHITTYIHRVGRTAR-AGRKGTAVTVLTEQDMTLFKKILSDANKGLGE-EIHVSPDIEIQHA 586

  Fly   571 ---------LQLEKLIAKNYFLNQSAKEAFKSYV 595
                     |:.||:..||..:.:..:.|.|:.:
  Fly   587 VEYKEALAGLRSEKVKNKNQKMAEKNRVATKALI 620

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pitNP_001287459.1 SrmB 186..677 CDD:223587 133/502 (26%)
DEADc 187..394 CDD:238167 71/252 (28%)
HELICc 408..537 CDD:238034 43/139 (31%)
DUF4217 569..627 CDD:290667 9/38 (24%)
Dbp73DNP_476833.1 PRK11192 149..629 CDD:236877 132/489 (27%)
DEAD 162..370 CDD:278688 64/215 (30%)
HELICc 418..551 CDD:238034 43/140 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45451792
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D973872at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24031
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.950

Return to query results.
Submit another query.