DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pit and Gem3

DIOPT Version :9

Sequence 1:NP_001287459.1 Gene:pit / 42595 FlyBaseID:FBgn0266581 Length:680 Species:Drosophila melanogaster
Sequence 2:NP_001261678.1 Gene:Gem3 / 39195 FlyBaseID:FBgn0011802 Length:1028 Species:Drosophila melanogaster


Alignment Length:509 Identity:125/509 - (24%)
Similarity:228/509 - (44%) Gaps:79/509 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   170 VESSLAALDYRDSD-----DRSFASLKGAVSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVG 229
            :..|||..:.|.||     .::|..|:  :....|..:|...|...|:||:.::...|...||:.
  Fly     5 IAHSLAGGEERSSDVAPGQVKTFEELR--LYRNLLNGLKRNNFVTPTKIQAAAIPMALAKMDLII 67

  Fly   230 AAQTGSGKTLAFLIPAVELINKLRFMPR-NGTGVIIISPTRELSMQTFGVLKELMAHHHHTY--- 290
            .:::|:||||.::|..|:..|     |. |....:|:.|||||::|    :::...|...::   
  Fly    68 QSKSGTGKTLIYVIAVVQSFN-----PNINQPHAMIVVPTRELAIQ----VQDTFFHLCKSFRDF 123

  Fly   291 --GLVMGGSNRQVESEKLGKGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEI-GFE 352
              ...:||::...:.:::.:. .:::.|||||| ||..:..|....|:.|::||.|::.:. ..:
  Fly   124 KCSAFIGGTDVAKDRKRMNES-RVIIGTPGRLL-HLYENRVFDVSKLRLLVLDEADQLYQTKSLQ 186

  Fly   353 EELKQIINLLPKRRQTMLFSATQTARI-EALSKLALKSEPIYVGVHDNQDTATV-DGLEQGYIVC 415
            ..:.::|..:||.||.:..|||....: |.|:|  :..:|:.:   .|.:.||| .|:.|.....
  Fly   187 HTVSKLIEAMPKNRQIIACSATYDQNLDERLAK--VMDKPMLI---SNSERATVLLGIRQFVYEL 246

  Fly   416 PSEK--------RLLVLFTFLKKNRKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKR 472
            |.:.        :|.:|.....:...::.::|.||.|....:........:....|.|..:|::|
  Fly   247 PQQNNSVEEMRLKLQILGQIFNQLPYEQAIIFASSQMRADSYKNYLTASGIDCHLISGAMEQSER 311

  Fly   473 TTTFFQFCNAESGILLCTDVAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHAL-- 535
            ...|..:.|....||:.||:.|||:|.|..:.::..|||.|...|:||:||..| .|:.|.|:  
  Fly   312 LHVFEGYRNFTMRILVATDLMARGVDSPHANLVINIDPPQDHVTYLHRIGRAGR-FGSKGIAITF 375

  Fly   536 LLMRPEELGFLR----------YLKAAKVPL-NEFEFSWQKIADIQLQLEKLIAKNYFLNQSAKE 589
            :..:.|...|..          .|:..|.|: |||.| |        ..||.....|...::..:
  Fly   376 IASKKESQRFREMSKKIATAWSVLEFPKEPMPNEFNF-W--------DFEKYNFDYYIKEENPLQ 431

  Fly   590 AFKSYVRAYDSHQLKQIFNVNTLDLQAVAKSFGFLVPPVVDLKVGAAKRERPEK 643
            .....::   .::.|:..:.:::||:.:.|.             ...||..|:|
  Fly   432 EMPMPIK---ENRSKENVDASSVDLENLQKD-------------QDGKRRDPDK 469

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pitNP_001287459.1 SrmB 186..677 CDD:223587 119/488 (24%)
DEADc 187..394 CDD:238167 57/214 (27%)
HELICc 408..537 CDD:238034 36/138 (26%)
DUF4217 569..627 CDD:290667 7/57 (12%)
Gem3NP_001261678.1 SrmB 24..541 CDD:223587 119/490 (24%)
P-loop_NTPase 27..228 CDD:304359 57/218 (26%)
Helicase_C 259..367 CDD:278689 31/108 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45451723
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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