DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pit and Ddx24

DIOPT Version :9

Sequence 1:NP_001287459.1 Gene:pit / 42595 FlyBaseID:FBgn0266581 Length:680 Species:Drosophila melanogaster
Sequence 2:NP_954550.1 Gene:Ddx24 / 373065 RGDID:727929 Length:851 Species:Rattus norvegicus


Alignment Length:703 Identity:173/703 - (24%)
Similarity:293/703 - (41%) Gaps:184/703 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 KKPEKL-----SKKHVAKDEDDDLEEDFQEAPLPKKKQQKQPPKKQQIQVANSDSESDDDEQEDE 105
            |.|.:|     :||..|:...::.||:..|:..||||.:.   |||:..:..::..:..||.|.:
  Rat    60 KNPSRLFSDETTKKRKAQAVSEEEEEEEGESSSPKKKIKL---KKQRDAILVAEGSAAQDECEGK 121

  Fly   106 ADEDSDLDEVAEVDEEDVDSGSEDDDQQEDEDEEEPVPAKKTKLLPNKSKAQNGKPAKDDEPFTV 170
            |.|.....|:....::.|...:       .|...:.||.||..  ..|.|....:......|...
  Rat   122 ASEPGAQGEITVCSDQKVGGAT-------SESLAQTVPRKKKN--KGKKKLDTFQSTAPKVPKKA 177

  Fly   171 ESSLAALDYRDSDDRSFASLKGAVSEATLRAIKEMGFTEMTEIQSKSLTPLLKGR-DLVGAAQTG 234
            ::.:..:..:.:|..::..|  .|.:|.|||:..:||:..|.||:.:|.|.::.: |::|||:||
  Rat   178 KTWMPEVQDQKADVSAWRDL--FVPKAVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETG 240

  Fly   235 SGKTLAFLIPAVELINKLRFM------------PRNG---------------------------- 259
            |||||||.||.:..:.:...|            ||.|                            
  Rat   241 SGKTLAFAIPMIHSVLQWHKMKAPPIPSSAGVPPRLGAAAHRGSPCKDGAKSGVLPEEATIETEA 305

  Fly   260 ----TGV---------------------------------------------------------- 262
                :||                                                          
  Rat   306 QPSDSGVQATAKAGASAASAQAGLFCDDDAGEGPSSLVEEKQSKDREEKLDEEQAGKLKQELCDQ 370

  Fly   263 --------------IIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKGINIL 313
                          ::::|||||::|....:..:.........:::||.:.|.:...|.:...|:
  Rat   371 IAVYKVHPRRPLLGLVLTPTRELAVQVRQHIDAVAKFTGINTAILVGGMSTQKQQRMLNRHPEIV 435

  Fly   314 VATPGRLLD-------HLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLL-----PKRR 366
            :||||||.:       ||.|     .:.|:||:|||.||::|.....||.|::.:|     ...|
  Rat   436 IATPGRLWELIKEKHPHLSN-----LRQLRCLVIDEADRMVEKDHFAELSQLLEMLNDSQYNPNR 495

  Fly   367 QTMLFSAT---------------------QTARIEAL-SKLALKSEPIYVGVHDNQDTATVDGLE 409
            ||::||||                     :||:::.| .|:.::.:|..:.:..|:  .||:.|.
  Rat   496 QTLVFSATLTLVHQAPARILHKKHVKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNE--GTVETLT 558

  Fly   410 QGYIVCPSEKRLLVLFTFLKKNRKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTT 474
            :..|.|.::::.|.|:.||.:...:. :||.:|...:|....|...:|:...::|....|.:|..
  Rat   559 ETKIHCETDEKDLYLYYFLMQYPGRS-LVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLR 622

  Fly   475 TFFQFCNAESGILLCTDVAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMR 539
            ...||...|..:||.|||||||||||:|..::.|..|.....||||.|||||.: :.|.:|:|:.
  Rat   623 NLEQFARLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYIHRSGRTARAT-SEGLSLMLIG 686

  Fly   540 PEE-LGFLRYLKAAK----VPLNEFEFSWQKIADIQLQLEKLIAKNYFLNQSA 587
            ||: :.|.:..|..|    :||...:..:..:...:::|.:.|.|..:.|..|
  Rat   687 PEDVINFKKIYKTLKKDEDIPLFPVQSKYMDMVKERIRLARQIEKAEYRNFQA 739

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pitNP_001287459.1 SrmB 186..677 CDD:223587 141/558 (25%)
DEADc 187..394 CDD:238167 79/357 (22%)
HELICc 408..537 CDD:238034 46/128 (36%)
DUF4217 569..627 CDD:290667 5/19 (26%)
Ddx24NP_954550.1 SrmB 191..735 CDD:223587 139/554 (25%)
P-loop_NTPase 194..505 CDD:304359 74/317 (23%)
Helicase_C 567..675 CDD:278689 40/108 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D973872at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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