DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pit and Hlc

DIOPT Version :9

Sequence 1:NP_001287459.1 Gene:pit / 42595 FlyBaseID:FBgn0266581 Length:680 Species:Drosophila melanogaster
Sequence 2:NP_001285517.1 Gene:Hlc / 33118 FlyBaseID:FBgn0001565 Length:560 Species:Drosophila melanogaster


Alignment Length:550 Identity:140/550 - (25%)
Similarity:245/550 - (44%) Gaps:101/550 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   194 VSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVE-LINKLRFMPR 257
            :.:..|:|:.::|:.:.|.|||.::..||:|:|:|..|:||||||..:.:|.:: ::|.......
  Fly    16 LDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLIQKILNSKLNASE 80

  Fly   258 NGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVM------GGSNRQV-ESEKLGKGINILVA 315
            .....::::||:||..|:..|:::|:    .:.|.|:      ..||..| :...|.:..:|:||
  Fly    81 QYVSAVVLAPTKELCRQSRKVIEQLV----ESCGKVVRVADIADSSNDTVTQRHALSESPDIVVA 141

  Fly   316 TPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLFSATQTARIE 380
            ||..||.:.:.......|:::.|::||.|.:...|:|::.|::|..||...|.:|.|||.|..:.
  Fly   142 TPANLLAYAEAGSVVDLKHVETLVVDEADLVFAYGYEKDFKRLIKHLPPIYQAVLVSATLTDDVV 206

  Fly   381 ALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVLFTFLK-KNRKKKVMVFFSS-- 442
            .:..|.| :.|:.:.: :..:....|.|....|:.....:..:|:..|| :..:.|.::|.:|  
  Fly   207 RMKGLCL-NNPVTLKL-EEPELVPQDQLSHQRILAEENDKPAILYALLKLRLIRGKSIIFVNSID 269

  Fly   443 -CMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTD--------------- 491
             |..|:...|.|.   :....::.:.....|..|..||......|::.:|               
  Fly   270 RCYKVRLFLEQFG---IRACVLNSELPANIRIHTISQFNKGTYDIIIASDEHHMEKPGGKSATNR 331

  Fly   492 ----------VAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMRPEELGFL 546
                      .|:||:|...|:.::.:|.|.|...||||.||||||:.         :...|.|:
  Fly   332 KSPRSGDMESSASRGIDFQCVNNVINFDFPRDVTSYIHRAGRTARGNN---------KGSVLSFV 387

  Fly   547 RYLKAAKVPLNEFEFSWQKIAD-IQLQLEKLIAKNYFLNQSAKEAFK----------SYVRAYDS 600
            . :|.:||. :..|   :|:.| ...|..:.|.|||.......|:|:          :.|..:|:
  Fly   388 S-MKESKVN-DSVE---KKLCDSFAAQEGEQIIKNYQFKMEEVESFRYRAQDCWRAATRVAVHDT 447

  Fly   601 ------------HQLKQIFNVNTLDLQAVAKSFGFLVPPVVDLKVGAAKRERPE-------KRVG 646
                        .:||..|..|..||||:...     .|:..:||.:...:.||       |||.
  Fly   448 RIREIKIEILNCEKLKAFFEENKRDLQALRHD-----KPLRAIKVQSHLSDMPEYIVPKALKRVV 507

  Fly   647 GG-----GFGFYKKMNEGSASKQRHFKQVN 671
            |.     |....|:..: ||:|....:|||
  Fly   508 GTSSSPVGASEAKQPRQ-SAAKAAFERQVN 536

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pitNP_001287459.1 SrmB 186..677 CDD:223587 139/549 (25%)
DEADc 187..394 CDD:238167 61/207 (29%)
HELICc 408..537 CDD:238034 36/157 (23%)
DUF4217 569..627 CDD:290667 17/79 (22%)
HlcNP_001285517.1 P-loop_NTPase 11..220 CDD:304359 61/208 (29%)
DEXDc 24..231 CDD:214692 59/212 (28%)
HELICc 234..386 CDD:238034 36/163 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45451783
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D973872at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24031
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
33.040

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