DRSC/TRiP Functional Genomics Resources

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Protein Alignment pit and ddx18

DIOPT Version :9

Sequence 1:NP_001287459.1 Gene:pit / 42595 FlyBaseID:FBgn0266581 Length:680 Species:Drosophila melanogaster
Sequence 2:NP_001003411.1 Gene:ddx18 / 321127 ZFINID:ZDB-GENE-030131-9685 Length:653 Species:Danio rerio


Alignment Length:682 Identity:405/682 - (59%)
Similarity:511/682 - (74%) Gaps:42/682 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 KLLMKKIVK---REKMKKELSQKKGNKNAQKQEPPKQNGNKPSKKPEKLSKKHVAKDEDDDLEED 67
            |:|.|||.|   :.|.:|.|..:|..:|:::.:             :.|.:..||.|...::.|:
Zfish     7 KILRKKIQKISEKNKQRKLLQSQKEEENSEEVK-------------DVLDESEVASDSAPNVIEE 58

  Fly    68 FQEAPLPKKKQQKQPPKKQQIQVANSDSESDDDEQEDEADEDSDLDEVAEVDEEDVDS--GSEDD 130
            .|::...:..:..|.|||::            .:::.:|..:|....|.:..::.||:  .|..:
Zfish    59 QQQSVSDEVNETSQKPKKKK------------KKRKLDATGESTTSSVKKAKKQSVDTTQASAGE 111

  Fly   131 DQQEDEDEEEPVPAKKTKLLPNKSKAQNGKPAKDDEPFTVESSLAALDYRDSDDRSFASLKGAVS 195
            ::|::|...|.|...:.   .|..|..:.:...|::...:.|.|...    .:|||||||...||
Zfish   112 EEQQEEGNLETVKCPEN---GNNEKEGSAEEDSDEDGPQLPSGLTGA----FEDRSFASLSEVVS 169

  Fly   196 EATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELINKLRFMPRNGT 260
            |.||:.:|||||..|||||.|::.|||:|||::.||:||||||||||||::|||.||:|||||||
Zfish   170 ENTLKGVKEMGFDTMTEIQHKTIRPLLEGRDVLAAAKTGSGKTLAFLIPSIELIYKLKFMPRNGT 234

  Fly   261 GVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKGINILVATPGRLLDHLQ 325
            |||::||||||:|||:|||||||.||.|||||:||||||..|::||..|:|||||||||||||||
Zfish   235 GVIVLSPTRELAMQTYGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGVNILVATPGRLLDHLQ 299

  Fly   326 NSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLFSATQTARIEALSKLALKSE 390
            |:|.|::||||||||||.|||||:||||||||||.||||:||:||||||||.::|.|::::||.|
Zfish   300 NTPGFMFKNLQCLIIDEADRILEVGFEEELKQIIKLLPKKRQSMLFSATQTRKVEDLARISLKKE 364

  Fly   391 PIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVLFTFLKKNRKKKVMVFFSSCMSVKYHHELFNY 455
            |:||||.||:|||||:||||||:|||||||.|:||||||||||||:|||||||||||:|:||.||
Zfish   365 PLYVGVDDNKDTATVEGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCMSVKFHYELLNY 429

  Fly   456 IDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGLDIPQVDWIVQYDPPDDPREYIHR 520
            |||||.:||||||||||||||||||||:|||||||||||||||||:||||||:||||||:|||||
Zfish   430 IDLPVMAIHGKQKQTKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQFDPPDDPKEYIHR 494

  Fly   521 VGRTARGSGTSGHALLLMRPEELGFLRYLKAAKVPLNEFEFSWQKIADIQLQLEKLIAKNYFLNQ 585
            |||||||....|||||::|||||||||:||.|||||:||||||.||:|||.||:|||.|||:|::
Zfish   495 VGRTARGINGRGHALLILRPEELGFLRFLKQAKVPLSEFEFSWTKISDIQSQLDKLIEKNYYLHK 559

  Fly   586 SAKEAFKSYVRAYDSHQLKQIFNVNTLDLQAVAKSFGFLVPPVVDLKVGAAKRERPEKRVGGGGF 650
            ||:||:||||||||||.||||:||.||||..||.||||.|||.|||.|.::|..:..||.|||||
Zfish   560 SAQEAYKSYVRAYDSHSLKQIYNVETLDLPKVAMSFGFKVPPFVDLNVHSSKGVKLHKRGGGGGF 624

  Fly   651 GFYKKMNEGSASKQRHFKQVNRDQ--AKKFMR 680
            |:.|..|   ..|.:.||.||:.:  .::|.|
Zfish   625 GYQKSKN---VHKAKIFKHVNKGKGDGRQFSR 653

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pitNP_001287459.1 SrmB 186..677 CDD:223587 365/492 (74%)
DEADc 187..394 CDD:238167 151/206 (73%)
HELICc 408..537 CDD:238034 111/128 (87%)
DUF4217 569..627 CDD:290667 42/57 (74%)
ddx18NP_001003411.1 SrmB 160..646 CDD:223587 365/488 (75%)
DEADc 161..368 CDD:238167 151/206 (73%)
HELICc 382..511 CDD:238034 111/128 (87%)
DUF4217 543..601 CDD:290667 42/57 (74%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170579902
Domainoid 1 1.000 275 1.000 Domainoid score I1723
eggNOG 1 0.900 - - E2759_KOG0342
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6697
Inparanoid 1 1.050 776 1.000 Inparanoid score I514
OMA 1 1.010 - - QHG53700
OrthoDB 1 1.010 - - D218522at33208
OrthoFinder 1 1.000 - - FOG0003394
OrthoInspector 1 1.000 - - oto39255
orthoMCL 1 0.900 - - OOG6_102072
Panther 1 1.100 - - LDO PTHR24031
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R549
SonicParanoid 1 1.000 - - X2746
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1716.800

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