DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pit and ddx55

DIOPT Version :9

Sequence 1:NP_001287459.1 Gene:pit / 42595 FlyBaseID:FBgn0266581 Length:680 Species:Drosophila melanogaster
Sequence 2:NP_775336.2 Gene:ddx55 / 286745 ZFINID:ZDB-GENE-021212-1 Length:593 Species:Danio rerio


Alignment Length:513 Identity:189/513 - (36%)
Similarity:287/513 - (55%) Gaps:41/513 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   184 DRSFASLKGAVSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVEL 248
            |..:.||...:.:..|:.:||:|||.||.:||..:...:..:|:...|.|||||||||:|||:|:
Zfish     6 DGKWGSLPVKLHDNILQTLKELGFTYMTPVQSACIPLFMSNKDVAAEAVTGSGKTLAFVIPALEI 70

  Fly   249 I----NKLRFMPRNGTGVIIISPTRELSMQTFGVL-KELMAHHHHTYGLVMGGSNRQVESEKL-G 307
            :    .||:.|.   .|.:||:|||||:||...|: :.|......|..|::||||...:.||| .
Zfish    71 LLKREEKLKKMQ---VGALIITPTRELAMQISEVMGRFLQGFPQFTQILLIGGSNPIEDVEKLKT 132

  Fly   308 KGINILVATPGRLLDHLQNSPDFL-----YKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQ 367
            :|.||::||||||.|..:...|.|     .|:|..|::||.||:|::|||..|..|:..|||:|:
Zfish   133 QGANIIIATPGRLEDMFRRKADGLDLATAVKSLDVLVLDEADRLLDMGFEASLNTILGYLPKQRR 197

  Fly   368 TMLFSATQTARIEALSKLALKSEPIYV-----GVHDNQDTATVDGLEQGYIVCPSEKRLLVLFTF 427
            |.|||||||..:|.|.:..|:: |:.:     ||..:....|...|...|.:|.:|::...|..|
Zfish   198 TGLFSATQTQELEKLVRAGLRN-PVRITVKEKGVAASSVQKTPAKLSNYYTMCRAEEKFNTLVAF 261

  Fly   428 LKKNRKKKVMVFFSSCMSVKYHHELFNYI--DLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCT 490
            |::::.:|.:||||:|..|:|..:....:  ::.:..||||.|. ||...|..|...:||||:||
Zfish   262 LRQHKHEKQLVFFSTCACVEYFGKALEVLVKNVSIHCIHGKMKH-KRNKIFADFRALKSGILVCT 325

  Fly   491 DVAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMRPEELGFLRYLKA-AKV 554
            ||.|||:|||:|:|::|||||.....::||.||||| .|..|:||:.:.|.|..::.:|.. .|.
Zfish   326 DVMARGIDIPEVNWVLQYDPPSSASSFVHRCGRTAR-IGNQGNALVFLLPMEESYVNFLSINQKC 389

  Fly   555 PLNEFEFSWQKIADIQLQLEKLIAKNYFLNQSAKEAFKSYVRAYDSHQLKQIFNVNTLDLQAVAK 619
            ||..|. |.:.:.|:..:|:.:...:..:.:....||.|||:||..|:...||.:..||..|:|:
Zfish   390 PLQSFS-SVKDVVDVLPKLKAMALGDRAMFEKGMRAFVSYVQAYAKHECSLIFRIKDLDFAALAR 453

  Fly   620 SFGFLVPPVVDLKVGAAKRERPEKRVGGGGFGFYKKMNEGSASKQRHFKQVNRDQAKK 677
            .|..:..|           :.||.|  |..|..:|.  |...:....||..||::.::
Zfish   454 GFALVRLP-----------KMPELR--GKTFPDFKA--EAIDTDTIRFKDKNREKQRQ 496

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pitNP_001287459.1 SrmB 186..677 CDD:223587 188/509 (37%)
DEADc 187..394 CDD:238167 92/217 (42%)
HELICc 408..537 CDD:238034 56/130 (43%)
DUF4217 569..627 CDD:290667 16/57 (28%)
ddx55NP_775336.2 Q motif 9..37 10/27 (37%)
SrmB 15..517 CDD:223587 186/504 (37%)
DEADc 16..224 CDD:238167 90/211 (43%)
DEAD box 171..174 2/2 (100%)
Helicase_C 252..363 CDD:278689 49/112 (44%)
DUF4217 403..462 CDD:290667 17/69 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 569..593
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D973872at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.920

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