DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pit and has1

DIOPT Version :9

Sequence 1:NP_001287459.1 Gene:pit / 42595 FlyBaseID:FBgn0266581 Length:680 Species:Drosophila melanogaster
Sequence 2:NP_594488.1 Gene:has1 / 2541668 PomBaseID:SPAC1F7.02c Length:578 Species:Schizosaccharomyces pombe


Alignment Length:636 Identity:330/636 - (51%)
Similarity:444/636 - (69%) Gaps:62/636 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 KPEKLSKKHVAKDEDDDLEEDFQEAPLPKKKQQKQPPKKQQIQVANSDSESDDDEQEDEADEDSD 111
            |.|...|||.:.:|:              .|:::|.|.|...::|....:.:||.:::|.:||:|
pombe     3 KSELKRKKHQSGNEE--------------VKEKRQKPLKNDKKIAEELPQDEDDYEQEEENEDAD 53

  Fly   112 LDEVAEVDEEDVDSGSEDDDQQEDEDEEEPVPAKKTKLLPNKSKAQNGKPAKDDEPFTVESSLAA 176
            .:...|.:.|::|:.:||:..|                   ||...|.....|.|.|   |.|  
pombe    54 QNTSVESESEELDNENEDERVQ-------------------KSVNLNASSTSDIEKF---SDL-- 94

  Fly   177 LDYRDSDDRSFASLKGAVSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAF 241
                            .:||...:|||||||..|||||.:|:.|||.|||::|||:|||||||||
pombe    95 ----------------QLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAF 143

  Fly   242 LIPAVELINKLRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKL 306
            |||.:|::..|:|.||||||||||||||||::|.|||.|||:.:||.|:|:|:||:||:.|::||
pombe   144 LIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKL 208

  Fly   307 GKGINILVATPGRLLDHLQNSPDFLYKNLQCLIIDEVDRILEIGFEEELKQIINLLP-KRRQTML 370
            .||:|:||||||||||||||:..|:::||:.|:|||.|||||||||:|::||:.:|| :.|||:|
pombe   209 VKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSENRQTLL 273

  Fly   371 FSATQTARIEALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVLFTFLKKNRKKK 435
            ||||||.::|.|::::||..|:||.|...:.|:||:||||||:|..|:||.|:||:|||:|.|||
pombe   274 FSATQTTKVEDLARISLKPGPLYVNVDSGKPTSTVEGLEQGYVVVDSDKRFLLLFSFLKRNLKKK 338

  Fly   436 VMVFFSSCMSVKYHHELFNYIDLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGLDIP 500
            |:||.|||.||||..||.|||||||..:||||||.:||.|||:|||||.||||||:|||||||||
pombe   339 VIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIP 403

  Fly   501 QVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMRPEELGFLRYLKAAKVPLNEFEFSWQK 565
            .||||||||||||||:|||||||||||:..:|.:|:.:.|.|||||||||.|||.||||||...|
pombe   404 AVDWIVQYDPPDDPRDYIHRVGRTARGTKGTGKSLMFLAPSELGFLRYLKTAKVSLNEFEFPANK 468

  Fly   566 IADIQLQLEKLIAKNYFLNQSAKEAFKSYVRAYDSHQLKQIFNVNTLDLQAVAKSFGFLVPPVVD 630
            :|::|.|||||::|||:|.||||:.::||::||.|:.||.||::|.|||..|||||||..||.|:
pombe   469 VANVQSQLEKLVSKNYYLQQSAKDGYRSYLQAYASYSLKSIFDINKLDLAKVAKSFGFAHPPNVN 533

  Fly   631 LKVGAAKR-ERPEKRVGGGGFGFYKKMNEGSASKQRHFKQVNRDQAKKFMR 680
            :.:||:.| ::.|:|.|      |.|.|......::....:::|:.:.:.|
pombe   534 ITIGASGRTDKKERRAG------YNKKNHVDVYSKQRSSAISQDKERGWSR 578

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pitNP_001287459.1 SrmB 186..677 CDD:223587 298/492 (61%)
DEADc 187..394 CDD:238167 127/207 (61%)
HELICc 408..537 CDD:238034 96/128 (75%)
DUF4217 569..627 CDD:290667 34/57 (60%)
has1NP_594488.1 SrmB 73..578 CDD:223587 307/550 (56%)
DEADc 91..298 CDD:238167 131/227 (58%)
HELICc 311..440 CDD:238034 96/128 (75%)
DUF4217 472..530 CDD:290667 34/57 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 240 1.000 Domainoid score I460
eggNOG 1 0.900 - - E2759_KOG0342
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6697
Inparanoid 1 1.050 632 1.000 Inparanoid score I137
OMA 1 1.010 - - QHG53700
OrthoFinder 1 1.000 - - FOG0003394
OrthoInspector 1 1.000 - - oto101100
orthoMCL 1 0.900 - - OOG6_102072
Panther 1 1.100 - - LDO PTHR24031
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R549
SonicParanoid 1 1.000 - - X2746
TreeFam 1 0.960 - -
1413.860

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