DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pit and ZK512.2

DIOPT Version :9

Sequence 1:NP_001287459.1 Gene:pit / 42595 FlyBaseID:FBgn0266581 Length:680 Species:Drosophila melanogaster
Sequence 2:NP_001254980.1 Gene:ZK512.2 / 176292 WormBaseID:WBGene00013983 Length:578 Species:Caenorhabditis elegans


Alignment Length:563 Identity:165/563 - (29%)
Similarity:283/563 - (50%) Gaps:83/563 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   192 GAVSEATLR--------AIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVEL 248
            |.|:..|.|        .:.:..:...|::|..|.|.||...|:|..:.|||||||||::|.:.:
 Worm     6 GPVALKTFREKLGPELLEVFDKSYKSFTDVQVLSGTHLLNLSDVVVESPTGSGKTLAFVLPMMRM 70

  Fly   249 INKLRFMPRNGTGVIIISPTRELSMQTFGVLKELMAHHHHTYGLVMGGS--NRQVESEKLGKGIN 311
            |...:..|.: .|.:|:||:|||..|...|::......:.|...|.||.  ::.::..| .|.:|
 Worm    71 IQNAKLQPAD-IGALILSPSRELCSQIVSVIQPFAEKLNLTVETVTGGQKVDKNIKMFK-NKNVN 133

  Fly   312 ILVATPGRLLDHLQNSPDFL---YKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLFSA 373
            |||||||||...:|:....:   .:.||.|:|||.||..||.||:.:::|::.:||:|:|.||||
 Worm   134 ILVATPGRLFQIIQHEKTLIARKMRTLQLLVIDEADRFNEIQFEDHMREILSCIPKQRRTGLFSA 198

  Fly   374 TQTARIEALSKLALKSEPIYVGVHDNQDTATVDGLEQGYIVCPSEKRLLVLFTFLKKNRKKKVMV 438
            ||....:.|....|::.. .|.|...:::|....|:..|:.|.::::..|...|:::...||:::
 Worm   199 TQVKEEDDLMVFGLRNAK-QVKVAQERNSAAPSTLKNYYVECRADEKTSVCLEFIRQRTDKKILI 262

  Fly   439 FFSSCMSVKYHHELFNYI--DLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGLDIPQ 501
            ||.||.||:|.:::|...  ..|:.::|||.....|.:....|.::.:|:::.|||.|||:||..
 Worm   263 FFPSCNSVRYFYKIFERCLGKRPLFAVHGKCSNPHRASQIKAFSDSTNGVMISTDVMARGIDISD 327

  Fly   502 VDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMRPEELGFLRYL-KAAKVPLNEFEF---S 562
            :||::|:|.|.....::||.||||| .|..|:||:|:..|:|.::.:| ...||.|:|.:.   :
 Worm   328 IDWVIQFDLPKHSSWFVHRAGRTAR-CGREGNALILIASEQLAYVNFLDNHEKVKLDEIKVPTNN 391

  Fly   563 WQKIADIQLQLEKLIAKNYFLNQSAKEAFKSYVRAYDSHQLKQIFNVNTLDLQAVAKSFGFLVPP 627
            .:|..:::.::.|:...:..:.::...||.|:|.:|..|....|.:::.|::..:|.|:..|..|
 Worm   392 SRKSEELRQKMIKIQVSDRAILEAGTRAFVSHVESYAKHDCHLICSLDDLNVVGLANSYALLRLP 456

  Fly   628 -------------------------VVDLKVGAAK----RERPEKRV------------------ 645
                                     ..|:|:.|.:    :|:.||:|                  
 Worm   457 KMRELSQRKDLDMFDRSAIETSEIKYADVKLEANRETVMKEKHEKKVETLAAKDKKRREKEARKL 521

  Fly   646 --------GGGGFGFYKKMNEGSASKQRHFKQVNRDQAKKFMR 680
                    .|||.|  :|..|..|.|:   |....|.|:..:|
 Worm   522 KKMGGRFRNGGGTG--RKAEEKKALKR---KAEEEDDAQNDIR 559

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pitNP_001287459.1 SrmB 186..677 CDD:223587 164/558 (29%)
DEADc 187..394 CDD:238167 75/214 (35%)
HELICc 408..537 CDD:238034 46/130 (35%)
DUF4217 569..627 CDD:290667 12/57 (21%)
ZK512.2NP_001254980.1 DEADc 17..219 CDD:238167 71/204 (35%)
DEXDc 24..220 CDD:214692 72/198 (36%)
HELICc 232..362 CDD:238034 46/130 (35%)
DUF4217 398..457 CDD:290667 12/58 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D973872at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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