DRSC/TRiP Functional Genomics Resources

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Protein Alignment pit and B0511.6

DIOPT Version :9

Sequence 1:NP_001287459.1 Gene:pit / 42595 FlyBaseID:FBgn0266581 Length:680 Species:Drosophila melanogaster
Sequence 2:NP_492779.1 Gene:B0511.6 / 172954 WormBaseID:WBGene00015232 Length:544 Species:Caenorhabditis elegans


Alignment Length:591 Identity:340/591 - (57%)
Similarity:427/591 - (72%) Gaps:53/591 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 KKKQQKQPPKKQQIQVANSDSESDDDEQEDEADEDSDLDEVAEVDEEDVDSGSEDDDQQEDEDEE 139
            |||..|:..|:.:           |..::.:|.|....:.:.|.|||:|:   |:...|.:|..|
 Worm     6 KKKVLKRKLKQMK-----------DGHEKKKAKEVVVEEPMEEEDEEEVE---EEQKHQTEESSE 56

  Fly   140 EPVPAKKTKLLPNKSKAQNGKPAKDDEPFTVESSLAALDYRDSDDRSFASLKGAVSEATLRAIKE 204
            ..|....||                                    .:||||:|.|:...|:|::.
 Worm    57 TKVSEFLTK------------------------------------TTFASLEGKVNANLLKAVQG 85

  Fly   205 MGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVELINKLRFMPRNGTGVIIISPTR 269
            :|||.|||||:||:.|||:|:|::.:|:||||||||||:||:||::||.:...|||||||:||||
 Worm    86 LGFTTMTEIQAKSIDPLLEGKDVLASAKTGSGKTLAFLLPAIELLHKLNWKQHNGTGVIIVSPTR 150

  Fly   270 ELSMQTFGVLKELMAHHHHTYGLVMGGSNRQVESEKLGKGINILVATPGRLLDHLQNSPDFLYKN 334
            ||||||:|||.||:...:.|||||||||||..|.:||.||::|||||||||||||||:.:||.:|
 Worm   151 ELSMQTYGVLSELLEGSNLTYGLVMGGSNRSAEKDKLAKGVSILVATPGRLLDHLQNTDNFLVRN 215

  Fly   335 LQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLFSATQTARIEALSKLALKSEPIYVGVHDN 399
            ::||||||.||||:||||.|::|::..|||:||:||||||.:.:::.|.||||.|.|:.|.||:.
 Worm   216 MKCLIIDEADRILDIGFEIEMQQVLRHLPKQRQSMLFSATHSPKVDELVKLALHSNPVRVSVHEK 280

  Fly   400 QDTATVDGLEQGYIVCPSEKRLLVLFTFLKKNRKKKVMVFFSSCMSVKYHHELFNYIDLPVTSIH 464
            .:.|||:||:|||||.||:||||:||||||||:.||||||||||.|||:||||.||||:|..|||
 Worm   281 AEEATVEGLQQGYIVAPSDKRLLLLFTFLKKNKTKKVMVFFSSCNSVKFHHELLNYIDIPCMSIH 345

  Fly   465 GKQKQTKRTTTFFQFCNAESGILLCTDVAARGLDIPQVDWIVQYDPPDDPREYIHRVGRTARGSG 529
            |||||.||||||||||.||:||||||||||||||||.|||||||||.|:||||||||||||||:.
 Worm   346 GKQKQQKRTTTFFQFCQAETGILLCTDVAARGLDIPAVDWIVQYDPTDEPREYIHRVGRTARGTN 410

  Fly   530 TSGHALLLMRPEELGFLRYLKAAKVPLNEFEFSWQKIADIQLQLEKLIAKNYFLNQSAKEAFKSY 594
            .||.|||::||||||||||||||||.||||||||.|:|:||.|||.||:|||:||:|||||:|.|
 Worm   411 GSGKALLVLRPEELGFLRYLKAAKVTLNEFEFSWSKVANIQSQLENLISKNYYLNKSAKEAYKCY 475

  Fly   595 VRAYDSHQLKQIFNVNTLDLQAVAKSFGFLVPPVVDLKVGAAKRERPEKRVGGGGFGFYKKMNEG 659
            :||||||.||.||:|..:||.||:|||||.|||.|||.:....:.....::.|.|   |:|..:.
 Worm   476 LRAYDSHSLKDIFDVTNMDLTAVSKSFGFSVPPFVDLPISNKPKVEIRSKLSGAG---YRKKKQS 537

  Fly   660 SASKQR 665
            ...|.:
 Worm   538 FTFKAK 543

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pitNP_001287459.1 SrmB 186..677 CDD:223587 320/480 (67%)
DEADc 187..394 CDD:238167 130/206 (63%)
HELICc 408..537 CDD:238034 106/128 (83%)
DUF4217 569..627 CDD:290667 40/57 (70%)
B0511.6NP_492779.1 DEADc 68..276 CDD:238167 130/207 (63%)
DEXDc 83..291 CDD:214692 130/207 (63%)
Helicase_C 312..407 CDD:278689 80/94 (85%)
DUF4217 450..508 CDD:290667 40/57 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160158890
Domainoid 1 1.000 234 1.000 Domainoid score I1348
eggNOG 1 0.900 - - E2759_KOG0342
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6697
Inparanoid 1 1.050 656 1.000 Inparanoid score I412
Isobase 1 0.950 - 0 Normalized mean entropy S302
OMA 1 1.010 - - QHG53700
OrthoDB 1 1.010 - - D218522at33208
OrthoFinder 1 1.000 - - FOG0003394
OrthoInspector 1 1.000 - - oto17676
orthoMCL 1 0.900 - - OOG6_102072
Panther 1 1.100 - - LDO PTHR24031
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R549
SonicParanoid 1 1.000 - - X2746
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1716.790

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