DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pit and ddx55

DIOPT Version :9

Sequence 1:NP_001287459.1 Gene:pit / 42595 FlyBaseID:FBgn0266581 Length:680 Species:Drosophila melanogaster
Sequence 2:NP_001120242.1 Gene:ddx55 / 100145293 XenbaseID:XB-GENE-972462 Length:594 Species:Xenopus tropicalis


Alignment Length:509 Identity:183/509 - (35%)
Similarity:281/509 - (55%) Gaps:39/509 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   189 SLKGAVSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIPAVE-LINKL 252
            ||...::.:..:.:.|:.||.||.:||.::...:..:|:...|.|||||||||:||.:| |:.:.
 Frog    11 SLSHKLNSSIRQTLSELKFTHMTPVQSATIPLFMNNKDIAAEAITGSGKTLAFVIPLLEILLKRE 75

  Fly   253 RFMPRNGTGVIIISPTRELSMQTFGVLKELMAHH-HHTYGLVMGGSNRQVESEKLGK-GINILVA 315
            ..:.:|..|.|||:|||||::|...||.....|. ..:..|::||||...:..|..: |.||:||
 Frog    76 EKLKKNQVGAIIITPTRELAVQIDEVLSYFTKHFPQFSQILLIGGSNPVDDVMKFKEHGGNIIVA 140

  Fly   316 TPGRLLDHLQNSPDFL-----YKNLQCLIIDEVDRILEIGFEEELKQIINLLPKRRQTMLFSATQ 375
            |||||.|..:...|.|     .|.|..||:||.||:|::|||..:..|:..|||:|:|.||||||
 Frog   141 TPGRLEDMFRRQADGLDLVSYVKTLDVLILDEADRLLDMGFEASINTILGFLPKQRRTGLFSATQ 205

  Fly   376 TARIEALSKLALKSEPIYVGVHDNQDTATVD-----GLEQGYIVCPSEKRLLVLFTFLKKNRKKK 435
            |..:|.|.:..|:: |:.:.|.:....||..     .|:..|::|.::::...|..||::.:::|
 Frog   206 TQELENLVRAGLRN-PVRIAVKEKGVAATCTQKTPIRLQNYYMICKADEKFNKLVAFLQQRKQEK 269

  Fly   436 VMVFFSSCMSVKYHHELFNYI--DLPVTSIHGKQKQTKRTTTFFQFCNAESGILLCTDVAARGLD 498
            .:||||:|..|:|:.:....:  ::.|..||||.|. ||...|.:|....||||:||||.|||:|
 Frog   270 HLVFFSTCACVEYYGKALEALLKNVKVMCIHGKMKH-KRNRIFTEFRKLNSGILVCTDVMARGID 333

  Fly   499 IPQVDWIVQYDPPDDPREYIHRVGRTARGSGTSGHALLLMRPEELGFLRYLKA-AKVPLNEFEFS 562
            ||:|:|:||||||.....::||.||||| .|..|.||:.:.|.|..::.:|.. .|.||.|..  
 Frog   334 IPEVNWVVQYDPPSSASAFVHRCGRTAR-IGHHGSALVFLLPMEESYVSFLSINQKCPLQEMT-- 395

  Fly   563 WQKIADIQL--QLEKLIAKNYFLNQSAKEAFKSYVRAYDSHQLKQIFNVNTLDLQAVAKSFGFLV 625
             :.|:.:.|  :|:.:...:..:.:...:||.|||:||..|:...||.|..||...:|:.||.|.
 Frog   396 -ELISAVDLLPKLKSMAESDRAVFEKGMKAFVSYVQAYAKHECNLIFRVKDLDFSNLARGFGLLR 459

  Fly   626 PPVVDLKVGAAKRERPEKRVGGGGFGFYKKMNEGSASKQRHFKQVNRDQAKKFM 679
            .|           ..||.|    |..|...::....:....:|..||::.::.|
 Frog   460 MP-----------RMPELR----GKNFSDFVSTTIDTDSIPYKDKNREKQRQKM 498

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pitNP_001287459.1 SrmB 186..677 CDD:223587 182/505 (36%)
DEADc 187..394 CDD:238167 86/212 (41%)
HELICc 408..537 CDD:238034 57/130 (44%)
DUF4217 569..627 CDD:290667 19/59 (32%)
ddx55NP_001120242.1 SrmB 5..519 CDD:223587 183/509 (36%)
DEADc 9..224 CDD:238167 86/213 (40%)
HELICc 252..371 CDD:238034 54/120 (45%)
DUF4217 403..462 CDD:290667 20/69 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D973872at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

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