DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6015 and prp17

DIOPT Version :9

Sequence 1:NP_651005.1 Gene:CG6015 / 42593 FlyBaseID:FBgn0038927 Length:576 Species:Drosophila melanogaster
Sequence 2:NP_001342709.1 Gene:prp17 / 2541168 PomBaseID:SPBC6B1.10 Length:558 Species:Schizosaccharomyces pombe


Alignment Length:597 Identity:231/597 - (38%)
Similarity:338/597 - (56%) Gaps:69/597 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 SYASSSDEESDHADAATATTNSEPSAPIPDHLLPVDKTHSLSKSIAVCAAPTVVPLGASAVPRTL 70
            :|:|.|:|:.          ||:  :|   ::.|:..|.:|        ||.||......:..:.
pombe     5 NYSSDSEEQE----------NSQ--SP---NIQPLLHTENL--------APAVVDNVKDDLIVSK 46

  Fly    71 DPTLKEVTYNPRYEEMYAPVKGPEHPDLTMQQRAPRNTLAGYVEKAHINAFEF--ENQRRTFHTY 133
            ....:|:..|....||..|..||.:|.:|.:|.:.:|::.||.|:.::..|.|  |....|...|
pombe    47 GGNSRELARNVPVNEMVQPALGPANPFVTKEQDSIKNSITGYAEREYVPNFVFNQEYYANTHAIY 111

  Fly   134 GYALDPSVDDQADGQSFVGDLQSAYDDNGKTVFEPPKAKKLRKQEKNDNPED---IEG---FLGP 192
            |                    :..:|||..|.....|.|..:.:|:.::|.|   :||   :.||
pombe   112 G--------------------KRNFDDNEATTSTDLKRKSQKIKERREDPGDPSILEGDGAYKGP 156

  Fly   193 WGKFENEVSVAKPNEQERAELDELLSKRHK---RGRIPEDKPL--------------EEKSTLHI 240
            |..:.:|.|.:.....|..|::.|..|..|   ...:.:::.|              :|::.||.
pombe   157 WAGYGSEQSSSPLEYSEYEEVESLDVKSEKDTESNNLGQNELLKEQLATPEVETHRSKEETILHK 221

  Fly   241 KDAYDYQGRSYLHAPHDLGVNLRSNAPPTKCFLPKAHIHTWSGHNKGISSIRWFPKTAHLLLSGS 305
            ...:|||.|||:|.|:|:|:||........|::||.||.||.||.||||.:|:||.:.|||||||
pombe   222 DRLFDYQNRSYMHVPNDVGINLSEEPGEQTCYIPKKHIFTWKGHTKGISCLRFFPISGHLLLSGS 286

  Fly   306 MDCRVKLWEVYGERRCIRTFSGHRQAIKDIAWNNRGTNFLSASYDRYIKLWDAETGDVVSRFTTR 370
            ||.::|:||||.:|..:|||.||.:.|:|::::..|.:|||.|:|:.|||||.|.|..::.|.:.
pombe   287 MDNQIKIWEVYHDRSLLRTFQGHARPIRDLSFSQDGRSFLSTSFDKTIKLWDTELGKCLNCFNSD 351

  Fly   371 KMPFCVKFHPDNSKQHLFVAGTSDKKIICWDTRSGDIVQEYDRHLGSVSTITFVDDNRRFVTTSD 435
            ::..||||..|..|.:.|:|||:||:|:.:|.||.||||.||.|||.:::|||:::.:|||||||
pombe   352 RLTNCVKFQVDPDKPNEFLAGTADKRILQFDIRSPDIVQAYDHHLGGINSITFLENGKRFVTTSD 416

  Fly   436 DKSMRIWEWDIPVDMKYIADPTMHSMPAVTLAPNGKWMACQSLDNKIVIFSALNRFKMNRKKTFT 500
            |.|||.||:..||.:|::||..|||||.|.|.||||.:|||||||.|.::||..:::.|:||.|.
pombe   417 DSSMRFWEYGTPVPIKFVADIAMHSMPRVALRPNGKSIACQSLDNCIYVYSAYEKYRQNKKKVFK 481

  Fly   501 GHMVSGYACQLDFSPDMSYLVSGDGDGKCYIWDWKTTKMYKKWQAHDGVCISALWHPHEASKVVT 565
            |:..|||:.::.||||..::.|||..|....|||||.|:..|..||.|...|..:||.|.|||.|
pombe   482 GYSCSGYSLEVGFSPDGRFVFSGDSSGNACFWDWKTCKLMAKLPAHSGPVQSMAFHPQETSKVAT 546

  Fly   566 AG-WDGQIKYWD 576
            :. .||.|||||
pombe   547 SSIVDGSIKYWD 558

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6015NP_651005.1 WD40 <274..576 CDD:225201 157/302 (52%)
WD40 277..576 CDD:238121 155/299 (52%)
WD40 repeat 289..327 CDD:293791 22/37 (59%)
WD40 repeat 332..368 CDD:293791 15/35 (43%)
WD40 repeat 374..412 CDD:293791 20/37 (54%)
WD40 repeat 418..453 CDD:293791 19/34 (56%)
WD40 repeat 461..500 CDD:293791 21/38 (55%)
WD40 repeat 509..532 CDD:293791 8/22 (36%)
prp17NP_001342709.1 WD40 258..558 CDD:238121 155/299 (52%)
WD40 repeat 269..308 CDD:293791 23/38 (61%)
WD40 repeat 314..349 CDD:293791 14/34 (41%)
WD40 repeat 354..393 CDD:293791 20/38 (53%)
WD40 repeat 400..435 CDD:293791 19/34 (56%)
WD40 repeat 442..481 CDD:293791 21/38 (55%)
WD40 repeat 489..525 CDD:293791 15/35 (43%)
WD40 repeat 531..557 CDD:293791 12/25 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 83 1.000 Domainoid score I2269
eggNOG 1 0.900 - - E1_KOG0282
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5716
Inparanoid 1 1.050 418 1.000 Inparanoid score I351
OMA 1 1.010 - - QHG55903
OrthoFinder 1 1.000 - - FOG0004340
OrthoInspector 1 1.000 - - oto100939
orthoMCL 1 0.900 - - OOG6_102256
Panther 1 1.100 - - LDO PTHR43979
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R987
SonicParanoid 1 1.000 - - X3608
TreeFam 1 0.960 - -
1413.860

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