DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ND-42 and nuo-4

DIOPT Version :9

Sequence 1:NP_001262821.1 Gene:ND-42 / 42591 FlyBaseID:FBgn0019957 Length:407 Species:Drosophila melanogaster
Sequence 2:NP_741215.1 Gene:nuo-4 / 176001 WormBaseID:WBGene00019401 Length:436 Species:Caenorhabditis elegans


Alignment Length:387 Identity:133/387 - (34%)
Similarity:206/387 - (53%) Gaps:36/387 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 CSISG---KTMRGGP-----RVPKAAPYP--YKTKKYSVFNAIFDKTSKRFDENSKVICVEGPIA 92
            ||.||   ..:||..     |:|...|.|  ||...::..:.:.|.|...|.:|||:|.|||.|.
 Worm    18 CSRSGALSNQVRGVVHKSLLRLPSEHPEPWDYKHNGFNYIDGLKDDTRSHFHQNSKLIVVEGNIG 82

  Fly    93 AGKSKFAKELAEELDMEYYPAVDLDLIYINSYGYDMRKLDPQLPPSCRSYDVRNFCLDPSHDLAA 157
            :||:..||:||::|...::|...:|.|.::.||.|:|....:.|...|..|:..|..:||.:|:|
 Worm    83 SGKTTLAKQLADQLGFVHFPEFRMDDILVDRYGNDLRNYYNKFPARYRLPDISMFYKNPSGELSA 147

  Fly   158 QFQIRMYMLRYSQYIDALQHVLSTGQGVVLERSPYSDFVFMEAMFRQGYLSRGARSVYNELRQNT 222
            ..|.|::..|:.||::||.|:|:|||||||||:|:|||||..||..:.|:.......|..:|:|.
 Worm   148 AMQDRIFNCRFDQYLNALAHILNTGQGVVLERTPHSDFVFANAMRDKNYIGHEYFKHYYFVRKNA 212

  Fly   223 IGEL-LKPHLVIYLDLPVDAVKKQIKARNVDYEVQSKVFSDAYLSDLEQLYKQQYLKDISTHAEL 286
            :.:| ..||||:||:.|.:...:.||.|....|:.:  ..:.||..:|:.||.. |::...|:::
 Worm   213 LPQLHFWPHLVVYLNTPTNKCLENIKRRGNTDEIAT--VDERYLKTIEESYKDS-LREYRNHSKI 274

  Fly   287 LIYDWTAGGETEVVVEDIERIDFNQFE---ADIHNKKMLDWRFPLEAEWCEARIKYCHEKPD--L 346
            |.||||..|:|:.|||||||:|.:.||   .|:    |.:|...:::.......:|...|.|  :
 Worm   275 LAYDWTKPGDTDAVVEDIERLDLDFFEWHSGDV----MEEWNTIVDSVGWNGWRQYVTNKYDARM 335

  Fly   347 MNYFNVPRFDVPELVRSADDG----KVWRDVWFNAPGMKYRPGYNADMGDEGLLTKTKIGIN 404
            :.:..:|:.:|.||..:..|.    .|.|.....:|   |..||.|..||.      :.|:|
 Worm   336 LAFDGIPKHEVGELYTNPRDTGHFLHVMRKEVLKSP---YGYGYIAKNGDH------QAGLN 388

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ND-42NP_001262821.1 NDUO42 84..308 CDD:238988 90/224 (40%)
nuo-4NP_741215.1 NDUO42 74..296 CDD:238988 90/224 (40%)
AAA_33 74..261 CDD:290396 72/188 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160162750
Domainoid 1 1.000 174 1.000 Domainoid score I2203
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H15342
Inparanoid 1 1.050 199 1.000 Inparanoid score I2485
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1147235at2759
OrthoFinder 1 1.000 - - FOG0006118
OrthoInspector 1 1.000 - - oto17366
orthoMCL 1 0.900 - - OOG6_107081
Panther 1 1.100 - - LDO PTHR10513
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3846
SonicParanoid 1 1.000 - - X4410
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1413.930

Return to query results.
Submit another query.