DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cchl and Hccs

DIOPT Version :10

Sequence 1:NP_651003.1 Gene:Cchl / 42590 FlyBaseID:FBgn0038925 Length:281 Species:Drosophila melanogaster
Sequence 2:NP_001178661.1 Gene:Hccs / 317444 RGDID:1563855 Length:274 Species:Rattus norvegicus


Alignment Length:279 Identity:153/279 - (54%)
Similarity:191/279 - (68%) Gaps:26/279 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGNTAITRVQMEATKSVPVDHAKYMSGSGAPPPECPMH--QKHGDAKSASA-----------VPP 52
            ||::|.:......|.:.. ||   ...|.:||..||||  |:.|...:|:|           ||.
  Rat     1 MGSSASSPATAVNTSNAS-DH---QPASASPPSGCPMHEGQRKGCPVTAAASDLTSESKAHSVPA 61

  Fly    53 H-PKMQAASECPV----QHDNSDVNPLNMMPPANQQPAADQPFPLPTDRQTSTIPKVTEDGSVQF 112
            | .:.....||||    ..:..:::|.|:|||.||.|:.||||.|.|.|:.|:||:.   .|.:.
  Rat    62 HQDRAYEYVECPVTGAAAKNKENLDPSNLMPPPNQTPSPDQPFALSTSREESSIPRA---DSEKK 123

  Fly   113 WQYPSQQMFWNAMLRKGWRWKTEDVSQKDMGDIIRIHNANNEQAWQEVLKWEALHAKECG-NPRL 176
            |.|||:||||||||||||:||.:|:|||||.:||||||.||||||:|:||||||||.||. .|.|
  Rat   124 WVYPSEQMFWNAMLRKGWKWKDDDISQKDMYNIIRIHNQNNEQAWKEILKWEALHAHECPCGPSL 188

  Fly   177 KSFGGKAKDFSPRARFRSWLGYELPFDRHDWIVDRCGKDVRYVIDYYDGGLVDKDYRFALLDVRP 241
            ..|||||:::|||||.|||:||||||||||||::|||.:|||||||||||.|:|||:|.:|||||
  Rat   189 VRFGGKAREYSPRARIRSWMGYELPFDRHDWIINRCGTEVRYVIDYYDGGEVNKDYQFTILDVRP 253

  Fly   242 AMDSVDNVWDRMRVAYMRW 260
            |.||...|||||:||:.||
  Rat   254 AFDSFSAVWDRMKVAWWRW 272

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CchlNP_651003.1 Cyto_heme_lyase 12..260 CDD:426167 148/266 (56%)
HccsNP_001178661.1 Cyto_heme_lyase 1..272 CDD:426167 151/277 (55%)

Return to query results.
Submit another query.