DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6678 and AT5G42140

DIOPT Version :9

Sequence 1:NP_650996.1 Gene:CG6678 / 42581 FlyBaseID:FBgn0038917 Length:373 Species:Drosophila melanogaster
Sequence 2:NP_001318728.1 Gene:AT5G42140 / 834219 AraportID:AT5G42140 Length:1078 Species:Arabidopsis thaliana


Alignment Length:364 Identity:90/364 - (24%)
Similarity:145/364 - (39%) Gaps:92/364 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 CVSGDVDCA-AGFSELNAPVSTQNQCTISIGWRYAALAFGRKLCLRGLLDDGPNECVTLEATG-- 77
            |.|.|.:.| :.::..|.|.:::.:.::|....:.|             .|.||  :.:..||  
plant   159 CASRDFNIADSPYNSTNFPRTSRTENSVSSERSHVA-------------SDSPN--MLVRGTGSD 208

  Fly    78 ----NIRALAAADSH------CLVLLQSGQLYRVQPKLQAELVAVRLEAAPRSNSGTKRSIFGAA 132
                ::.::.::.||      |..|   |.:|     :..|::...:         ||   |||.
plant   209 AFRVSVSSVQSSSSHGSAPDDCDAL---GDVY-----IWGEVLCENV---------TK---FGAD 253

  Fly   133 KAPSSPIIEHIACGSHINVAISSENCVYSIPSCLHQFSERQFRVKQLQCGHEHAVLLNANGDVFT 197
            |                |:..........||..|.  |.....|..:.||.:||.|::..|:|||
plant   254 K----------------NIGYLGSRSDVLIPKPLE--SNVVLDVHHIACGVKHAALVSRQGEVFT 300

  Fly   198 WGNGLRGQLGLAELRVEETPQLLEALAGIKITQIAAGGWHSAAISAFGDLYTW--GLNCSGQLGL 260
            ||....|:||....:....|||:|:||...|..:|.|.:|:.|::..|::|||  |.:.:|.||.
plant   301 WGEASGGRLGHGMGKDVTGPQLIESLAATSIDFVACGEFHTCAVTMTGEIYTWGDGTHNAGLLGH 365

  Fly   261 RVMKPGGVLKEPTVFPLPQLQDLPECACSQSGESNDDCAPLRVFAGSRHTLLIRRCGRLWVSGWC 325
            .......:.|..: .||..|| :...:|                 |..||.||...|:|:..|..
plant   366 GTDVSHWIPKRIS-GPLEGLQ-IASVSC-----------------GPWHTALITSTGQLFTFGDG 411

  Fly   326 KHGQLGR-QLQDLSYVDAFQALEGITMNPTVDDVLCGPW 363
            ..|.||. ..:.:.|....::|.|:.   |: .|.||.|
plant   412 TFGVLGHGDKETVFYPREVESLSGLR---TI-AVACGVW 446

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6678NP_650996.1 ATS1 <78..371 CDD:227511 77/295 (26%)
RCC1_2 176..205 CDD:290274 12/28 (43%)
RCC1 192..241 CDD:278826 19/48 (40%)
RCC1_2 228..257 CDD:290274 10/30 (33%)
AT5G42140NP_001318728.1 PH_PLC_plant-like 12..124 CDD:270171
ATS1 <282..614 CDD:227511 58/188 (31%)
FYVE 621..689 CDD:214499
BRX_N 869..904 CDD:372684
BRX 1003..1057 CDD:369842
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

Return to query results.
Submit another query.