DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6678 and RUG1

DIOPT Version :9

Sequence 1:NP_650996.1 Gene:CG6678 / 42581 FlyBaseID:FBgn0038917 Length:373 Species:Drosophila melanogaster
Sequence 2:NP_680156.2 Gene:RUG1 / 830771 AraportID:AT5G08710 Length:434 Species:Arabidopsis thaliana


Alignment Length:369 Identity:96/369 - (26%)
Similarity:144/369 - (39%) Gaps:104/369 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 GWRYAAL----AFGRKLCLRGLLDD--GPNECVTLEATGNIRALAAADSHCLVLLQS-------- 95
            |.|:||:    .:|| |.| |.||.  .|..|..| :..:|.|:|...:|.|.|.::        
plant    47 GKRFAAMWGSGDYGR-LGL-GNLDSQWTPAVCSAL-SDHSITAVACGGAHTLFLTETRRVFATGL 108

  Fly    96 ---GQLYRVQPKLQAELVAVRLEAAPRSNSGTKRSIFGAAKAPSSPIIEHIACGSHINVAISSEN 157
               |||.....|..|        ..|...||..:.|.            ||:.|.:.:.||:.:.
plant   109 NDCGQLGVSDVKSHA--------MDPLEVSGLDKDIL------------HISAGYYHSAAITVDG 153

  Fly   158 CVY--------------------SIPS---CLHQFSERQFRVKQLQCGHEHAVLLNANGDVFTWG 199
            .:|                    .:|:   .||..:     ::.:..|.||:|.:...|:|.:||
plant   154 ELYMWGKNSSGQLGLGKKAARVVRVPTKVEALHGIT-----IQSVALGSEHSVAVTDGGEVLSWG 213

  Fly   200 NGLRGQL---------GLAELRVEETPQLLEALAGIKITQIAAGGWHSAAISAFGDLYTWGLNCS 255
            .|..|:|         |:.....|.||:|::.|.|||:|.:|||..|||.....|..:.:|....
plant   214 GGGSGRLGHGHQSSLFGILRSNSEFTPRLIKELEGIKVTNVAAGLLHSACTDENGSAFMFGEKSI 278

  Fly   256 GQLGLRVMKPGGVLKEPTVFPLPQLQDLPECACSQSGESNDDCAPLRVFAGSRHTLLIRRCGRLW 320
            .::|.     |||....|...:.::....|.||                 |..||.::.|.|.|:
plant   279 NKMGF-----GGVRNATTPSIISEVPYAEEVAC-----------------GGYHTCVVTRGGELY 321

  Fly   321 VSGWCKHGQLGRQLQDLSYVDAFQA-LEGITMNPTVDDVLCGPW 363
            ..|..::|.||   .|.:||..... :||..:..||..|.|| |
plant   322 TWGSNENGCLG---TDSTYVSHSPVRVEGPFLESTVSQVSCG-W 361

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6678NP_650996.1 ATS1 <78..371 CDD:227511 82/330 (25%)
RCC1_2 176..205 CDD:290274 9/28 (32%)
RCC1 192..241 CDD:278826 23/57 (40%)
RCC1_2 228..257 CDD:290274 9/28 (32%)
RUG1NP_680156.2 RCC1 54..97 CDD:395335 15/45 (33%)
ATS1 93..432 CDD:227511 79/320 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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