Protein Alignment CG6678 and Rcc1

DIOPT Version :9

• Sequence 1: NP_650996.1
• Gene: CG6678 / 42581
• FlyBaseID: FBgn0038917
• Length: 373
• Species: Drosophila melanogaster
• Sequence 2: XP_006239135.1
• Gene: Rcc1 / 682908
• RGDID: 1592835
• Length: 434
• Species: Rattus norvegicus
• Alignment Length: 243
• Identity: 60/243 - (24%)
• Similarity: 94/243 - (38%)
• Gaps: 52/243 - (21%)

  Fly   123 GTKRSIFGAAKAPSSPIIEHI----ACGSHINVAISSENCVYS--------------------IP 163
            |...|:....|....|:::.:    |.|.| .|.:|....|||                    :|
  Rat    62 GLGESVLERKKPALVPLLQDVVQAEAGGMH-TVCLSQSGQVYSFGCNDEGALGRDTSVEGSEMVP 125

  Fly   164 SCLHQFSERQFRVKQLQCGHEHAVLLNANGDVFTWGN--GLRGQLGLAE-LRVEETPQLLEALAG 225
            ..:    |.|.:|.|:..|..|...|..:|.||.||:  ...|.:||.| ::....|  ::....
  Rat   126 GKV----ELQEKVVQVSAGDSHTAALTEDGRVFLWGSFRDNNGVIGLLEPMKKSMVP--VQVQLD 184

  Fly   226 IKITQIAAGGWHSAAISAFGDLYTWGLNCSGQLGLRVMKPGGVLKEPTVFP-------LPQLQDL 283
            .::.::|:|..|...::..|||||.|....||||          :.|.:|.       |.:|. :
  Rat   185 TQVVKVASGNDHLVMLTTDGDLYTLGCGEQGQLG----------RVPELFANRGGRQGLERLL-V 238

  Fly   284 PECACSQSGESNDDCAPLRVFAGSRHTLLIRRCGRLWVSGWCKHGQLG 331
            |.|...:|..:.........|.|:..|..|.|.|.::..|...:.|||
  Rat   239 PRCVLLKSRGTRGRVRFQDAFCGAYFTFAISREGHVYGFGLSNYHQLG 286

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG6678	NP_650996.1	ATS1	<78..371	CDD:227511	60/243 (25%)
		RCC1_2	176..205	CDD:290274	10/30 (33%)
		RCC1	192..241	CDD:278826	13/51 (25%)
		RCC1_2	228..257	CDD:290274	9/28 (32%)
Rcc1	XP_006239135.1	ATS1	19..432	CDD:227511	60/243 (25%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5184
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1062377at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.910