DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6678 and RPGR

DIOPT Version :9

Sequence 1:NP_650996.1 Gene:CG6678 / 42581 FlyBaseID:FBgn0038917 Length:373 Species:Drosophila melanogaster
Sequence 2:NP_001030025.1 Gene:RPGR / 6103 HGNCID:10295 Length:1152 Species:Homo sapiens


Alignment Length:339 Identity:82/339 - (24%)
Similarity:135/339 - (39%) Gaps:77/339 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 ELNAPVSTQNQCTI--SIGWRYAAL----AFGRKLCLRGLLDDGPNECVTLEATGNIRALAAADS 87
            |.:|.|:..|:..:  |..|....|    |..:..|::.|    ..|.|.|.|.|.        :
Human    45 EHSAVVTGNNKLYMFGSNNWGQLGLGSKSAISKPTCVKAL----KPEKVKLAACGR--------N 97

  Fly    88 HCLVLLQSGQLYRVQPKLQAELVAVRLEAAPRSNSGTKRSIFGAAKAPSSPIIEHIACGSHINVA 152
            |.||..:.|.:|......:.:|   .|......|:....|.|     .|...|:.::.||:.:.|
Human    98 HTLVSTEGGNVYATGGNNEGQL---GLGDTEERNTFHVISFF-----TSEHKIKQLSAGSNTSAA 154

  Fly   153 ISSENCVYSIPSCLHQFSERQFRVKQ------------------LQCGHEHAVLLNANGDVFTWG 199
            ::.:..::    .....||.|..:|.                  :.||:.|:..:..:|:::.:|
Human   155 LTEDGRLF----MWGDNSEGQIGLKNVSNVCVPQQVTIGKPVSWISCGYYHSAFVTTDGELYVFG 215

  Fly   200 NGLRGQLGLAE--LRVEETPQLLEALAGIKITQIAAGGWHSAAISAFGDLYTWGLNCSGQLGLRV 262
            ....|:|||..  |....||||:..:.. |:.|:|.||.|:..::. ..:||:||...|||||  
Human   216 EPENGKLGLPNQLLGNHRTPQLVSEIPE-KVIQVACGGEHTVVLTE-NAVYTFGLGQFGQLGL-- 276

  Fly   263 MKPGGVL---KEPTVFPLPQLQDLPECACSQSGESNDDCAPLRVFAGSRHTLLIRRCGRLWVSGW 324
               |..|   .||.|....:.|.:...:|                 |..||.||...|.::..|.
Human   277 ---GTFLFETSEPKVIENIRDQTISYISC-----------------GENHTALITDIGLMYTFGD 321

  Fly   325 CKHGQLGRQLQDLS 338
            .:||:||..|::.:
Human   322 GRHGKLGLGLENFT 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6678NP_650996.1 ATS1 <78..371 CDD:227511 67/284 (24%)
RCC1_2 176..205 CDD:290274 6/46 (13%)
RCC1 192..241 CDD:278826 17/50 (34%)
RCC1_2 228..257 CDD:290274 9/28 (32%)
RPGRNP_001030025.1 RCC1 <38..312 CDD:332518 75/314 (24%)
RCC1 314..360 CDD:306840 7/22 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
22.010

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