DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6678 and rccd1

DIOPT Version :9

Sequence 1:NP_650996.1 Gene:CG6678 / 42581 FlyBaseID:FBgn0038917 Length:373 Species:Drosophila melanogaster
Sequence 2:XP_009296664.1 Gene:rccd1 / 567613 ZFINID:ZDB-GENE-030131-3552 Length:312 Species:Danio rerio


Alignment Length:345 Identity:99/345 - (28%)
Similarity:139/345 - (40%) Gaps:107/345 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 GPNE--CVTLEATGNIRALAAADSHCLVLLQSGQLYRVQP-------KLQAELVAVRLEAAPRSN 121
            ||:.  ||:...|.   ||.:.....|......:|:.::|       |.:.||.|....|.|..:
Zfish    12 GPSAQVCVSQGCTD---ALISETHLTLSFTDRVELWEIKPQQNQLVWKREHELSAEHTAALPLVS 73

  Fly   122 SGTKRSIFGAAKAPSSPIIEHIACGSHINVAISSENCVYSIPSCLHQFSERQFRVKQLQCGHEHA 186
            .|               .::|                   .|...|..   :.....|..|.|||
Zfish    74 GG---------------FVQH-------------------KPPFFHPL---KLCAVSLVLGSEHA 101

  Fly   187 VLLNANGDVFTWGNGLRGQLGLAELRVEETPQLLEALAGIKITQIAAGGWHSAAISAFGDLYTWG 251
            :||.|:|.:::||:|..||||...|...|.||.:|||.|:.|..:|||.|||||:|:.||||.||
Zfish   102 LLLTADGTLYSWGSGSHGQLGHGALTSLEDPQAVEALWGVPIKAVAAGNWHSAAVSSGGDLYMWG 166

  Fly   252 LNCSGQLGLRVMKPGGVLKEPTVFPLPQLQDLPECACSQSGESNDDCAPL--------------- 301
            .|.||||||           |:       :.|.|.....:|..||| .|:               
Zfish   167 WNESGQLGL-----------PS-------RGLEEEKRRGNGSGNDD-QPMNTDEKSQTDVFISIQ 212

  Fly   302 ---------------RVFAGSRHTLLIRRCGRLWVSGWCKHGQLG----RQLQDLSYVDAFQALE 347
                           |:..|||||..:...|.|:..||.::||||    ....:.:.||.|.   
Zfish   213 AFPALVDIANMSEISRISCGSRHTAAVTSAGDLYTWGWGQYGQLGHGTEHSTDEPTPVDYFS--- 274

  Fly   348 GITMNPTVDDVLCGPWSTLL 367
              :.:.:|.||:||.|:|.:
Zfish   275 --SHSLSVKDVVCGSWNTFV 292

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6678NP_650996.1 ATS1 <78..371 CDD:227511 94/331 (28%)
RCC1_2 176..205 CDD:290274 12/28 (43%)
RCC1 192..241 CDD:278826 24/48 (50%)
RCC1_2 228..257 CDD:290274 18/28 (64%)
rccd1XP_009296664.1 RCC1_2 92..120 CDD:290274 12/27 (44%)
RCC1 107..156 CDD:278826 24/48 (50%)
RCC1_2 143..172 CDD:290274 18/28 (64%)
RCC1 160..239 CDD:278826 27/97 (28%)
RCC1_2 226..255 CDD:290274 10/28 (36%)
RCC1 243..292 CDD:278826 18/53 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170595207
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 119 1.000 Inparanoid score I4760
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 1 1.000 - - FOG0003064
OrthoInspector 1 1.000 - - otm24458
orthoMCL 1 0.900 - - OOG6_108718
Panther 1 1.100 - - LDO PTHR46849
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3591
SonicParanoid 1 1.000 - - X3975
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1110.930

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