DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6678 and rcc2

DIOPT Version :9

Sequence 1:NP_650996.1 Gene:CG6678 / 42581 FlyBaseID:FBgn0038917 Length:373 Species:Drosophila melanogaster
Sequence 2:NP_998341.1 Gene:rcc2 / 406455 ZFINID:ZDB-GENE-040426-2213 Length:495 Species:Danio rerio


Alignment Length:352 Identity:82/352 - (23%)
Similarity:135/352 - (38%) Gaps:111/352 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 GFNAFGQHE--CVSG-DVDCAAGFSELNAPVSTQNQCTISIG--WRYAALAFGRKLCLRGLLDDG 66
            |.|.:|.|.  |:|. .|.|.     ::.|.:..:....:.|  |     ::||.  .:|.|..|
Zfish   106 GQNLWGPHRYGCLSDVQVSCV-----VSGPCAAHSLIITTEGKLW-----SWGRN--DKGQLGHG 158

  Fly    67 PNECV----TLEATGN--IRALAAADSHCLVLLQSGQLYRVQPKLQAELVAVRLEAAPRSNSGTK 125
            ..:.:    .:|..|.  |.|.|...:|.|.|.::|.:|........:|           ..|.:
Zfish   159 DTKRLEAPKLIEGLGEEVIVAAACGRNHTLALTENGTVYTFGENKLGQL-----------GQGNQ 212

  Fly   126 RSIFGAAKAPSS------PIIEHIACGSHINVAISSENCVYS----------------------- 161
            ..   |..:|::      ||:: :|||:..::.:..:..:||                       
Zfish   213 TD---AVLSPATIQYNGQPIVK-VACGAEFSMIVDCKGNLYSFGCPEYGQLGHNSDGKFIARAQR 273

  Fly   162 -------IPSCLHQFSER----------QFRVKQLQCGHEHAVLLNANGDVFTWGNGLRGQLGLA 209
                   ||..:..|.|:          ....:.:.||..|.::|::...||:||.|..|:||.|
Zfish   274 IEFDCELIPRRVAIFIEKTKDGQVLPVPNVVARDVACGANHTLVLDSQKRVFSWGFGGYGRLGHA 338

  Fly   210 ELRVEETPQLLEA--LAGIKITQIAAGGWHSAAISAFGDLYTWGL-NCSGQLGLRVMKPGGVLKE 271
            |.:.|..|:|::.  ..|...|||..|...|.|:|..|.|:.||: |.|              :|
Zfish   339 EQKDEMVPRLVKLFDFPGRGATQIYCGYQCSFALSEMGGLFFWGVTNTS--------------RE 389

  Fly   272 PTVFPLPQLQDLPEC-------ACSQS 291
            .|::| ..:|||  |       ||.:|
Zfish   390 STMYP-KAVQDL--CGWKIRSLACGKS 413

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6678NP_650996.1 ATS1 <78..371 CDD:227511 64/272 (24%)
RCC1_2 176..205 CDD:290274 9/28 (32%)
RCC1 192..241 CDD:278826 19/50 (38%)
RCC1_2 228..257 CDD:290274 13/29 (45%)
rcc2NP_998341.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..56
RCC1 1 76..138 9/36 (25%)
RCC1_2 121..154 CDD:290274 7/44 (16%)
RCC1 2 141..192 15/57 (26%)
RCC1 141..190 CDD:278826 14/55 (25%)
RCC1 193..242 CDD:278826 11/63 (17%)
RCC1 3 194..244 11/64 (17%)
RCC1 245..318 CDD:278826 9/72 (13%)
RCC1 4 246..320 10/73 (14%)
Required for interaction with RAC1. /evidence=ECO:0000250|UniProtKB:Q9P258 291..298 0/6 (0%)
RCC1 5 321..374 20/52 (38%)
RCC1 323..372 CDD:278826 19/48 (40%)
RCC1 6 376..420 16/55 (29%)
RCC1 7 421..474
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

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