DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6678 and rcc2

DIOPT Version :10

Sequence 1:NP_650996.1 Gene:CG6678 / 42581 FlyBaseID:FBgn0038917 Length:373 Species:Drosophila melanogaster
Sequence 2:NP_998341.1 Gene:rcc2 / 406455 ZFINID:ZDB-GENE-040426-2213 Length:495 Species:Danio rerio


Alignment Length:352 Identity:82/352 - (23%)
Similarity:135/352 - (38%) Gaps:111/352 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 GFNAFGQHE--CVSG-DVDCAAGFSELNAPVSTQNQCTISIG--WRYAALAFGRKLCLRGLLDDG 66
            |.|.:|.|.  |:|. .|.|.     ::.|.:..:....:.|  |     ::||.  .:|.|..|
Zfish   106 GQNLWGPHRYGCLSDVQVSCV-----VSGPCAAHSLIITTEGKLW-----SWGRN--DKGQLGHG 158

  Fly    67 PNECV----TLEATGN--IRALAAADSHCLVLLQSGQLYRVQPKLQAELVAVRLEAAPRSNSGTK 125
            ..:.:    .:|..|.  |.|.|...:|.|.|.::|.:|........:|           ..|.:
Zfish   159 DTKRLEAPKLIEGLGEEVIVAAACGRNHTLALTENGTVYTFGENKLGQL-----------GQGNQ 212

  Fly   126 RSIFGAAKAPSS------PIIEHIACGSHINVAISSENCVYS----------------------- 161
            ..   |..:|::      ||:: :|||:..::.:..:..:||                       
Zfish   213 TD---AVLSPATIQYNGQPIVK-VACGAEFSMIVDCKGNLYSFGCPEYGQLGHNSDGKFIARAQR 273

  Fly   162 -------IPSCLHQFSER----------QFRVKQLQCGHEHAVLLNANGDVFTWGNGLRGQLGLA 209
                   ||..:..|.|:          ....:.:.||..|.::|::...||:||.|..|:||.|
Zfish   274 IEFDCELIPRRVAIFIEKTKDGQVLPVPNVVARDVACGANHTLVLDSQKRVFSWGFGGYGRLGHA 338

  Fly   210 ELRVEETPQLLEA--LAGIKITQIAAGGWHSAAISAFGDLYTWGL-NCSGQLGLRVMKPGGVLKE 271
            |.:.|..|:|::.  ..|...|||..|...|.|:|..|.|:.||: |.|              :|
Zfish   339 EQKDEMVPRLVKLFDFPGRGATQIYCGYQCSFALSEMGGLFFWGVTNTS--------------RE 389

  Fly   272 PTVFPLPQLQDLPEC-------ACSQS 291
            .|::| ..:|||  |       ||.:|
Zfish   390 STMYP-KAVQDL--CGWKIRSLACGKS 413

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6678NP_650996.1 ATS1 175..>331 CDD:444065 41/127 (32%)
rcc2NP_998341.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..56
RCC1 1 76..138 9/36 (25%)
ATS1 126..474 CDD:444065 74/332 (22%)
RCC1 2 141..192 15/57 (26%)
RCC1 3 194..244 11/64 (17%)
RCC1 4 246..320 10/73 (14%)
Required for interaction with RAC1. /evidence=ECO:0000250|UniProtKB:Q9P258 291..298 0/6 (0%)
RCC1 5 321..374 20/52 (38%)
RCC1 6 376..420 16/55 (29%)
RCC1 7 421..474
Blue background indicates that the domain is not in the aligned region.

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