DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6678 and Rpgr

DIOPT Version :10

Sequence 1:NP_650996.1 Gene:CG6678 / 42581 FlyBaseID:FBgn0038917 Length:373 Species:Drosophila melanogaster
Sequence 2:NP_001360988.1 Gene:Rpgr / 367733 RGDID:1560136 Length:1035 Species:Rattus norvegicus


Alignment Length:383 Identity:88/383 - (22%)
Similarity:145/383 - (37%) Gaps:108/383 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 CAAGFSELNAPVSTQNQCTI--SIGWRYAAL----AFGRKLCLRGLLDDGPNECVTLEATGNIRA 81
            |.:...|..|.|:..|:..:  |..|....|    |..:..|::.|    ..|.|.|.|.|.   
  Rat    77 CLSCGDEHTAIVTGNNKLYMFGSNNWGQLGLGSKSAISKPTCIKAL----KPEKVKLAACGR--- 134

  Fly    82 LAAADSHCLVLLQSGQLYRVQPKLQAELVAVRLEAAPRSNSG-------TKRSIFGAAK--APSS 137
                 :|.||...:|.:|                ||..:|.|       ..|..|....  .||.
  Rat   135 -----NHTLVSTDTGGVY----------------AAGGNNEGQLGLGDTDDRDTFHQIGFFTPSD 178

  Fly   138 PIIEHIACGSHINVAISSENCVYSIPSCLHQFSERQFRVKQ------------------LQCGHE 184
             ||:.::.|::.:.|::.:..::    .....||.|..:|.                  :.||:.
  Rat   179 -IIKQLSAGANTSAALTEDGKLF----MWGDNSEGQIGLKNKSNVCIPHEVTVGKPISWISCGYY 238

  Fly   185 HAVLLNANGDVFTWGNGLRGQLGLAELRVEETPQLL------EALAGI--KITQIAAGGWHSAAI 241
            |:..:..:|:::|:|....|:|||..       |||      :.:.||  |:.|:|.||.|:..:
  Rat   239 HSAFVTTDGELYTFGEPENGKLGLPN-------QLLINHRSPQRVLGIPDKVIQVACGGGHTVVL 296

  Fly   242 SAFGDLYTWGLNCSGQLGLRVMKPGGVL---KEPTVFPLPQLQDLPECACSQSGESNDDCAPLRV 303
            :. ..:|.:||...|||||     |..|   .||.:....:.|.:...:|               
  Rat   297 TE-KVVYAFGLGQFGQLGL-----GTFLFETSEPKIIDRIKDQKISHISC--------------- 340

  Fly   304 FAGSRHTLLIRRCGRLWVSGWCKHGQLGRQLQDLSYVDAFQALEGITMNPTVDDVLCG 361
              |..||.|:...|.::..|..:||:||..:::.:. ..|..|....:..||..:.||
  Rat   341 --GENHTALMTDIGLMYTFGDGRHGKLGLGMENFTN-QFFPTLCSNFLKFTVQLIACG 395

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6678NP_650996.1 ATS1 175..>331 CDD:444065 44/184 (24%)
RpgrNP_001360988.1 ATS1 78..398 CDD:444065 87/382 (23%)
235kDa-fam <508..>761 CDD:130673
PTZ00341 <637..>870 CDD:173534
Blue background indicates that the domain is not in the aligned region.

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