DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6678 and HERC2

DIOPT Version :10

Sequence 1:NP_650996.1 Gene:CG6678 / 42581 FlyBaseID:FBgn0038917 Length:373 Species:Drosophila melanogaster
Sequence 2:NP_608388.2 Gene:HERC2 / 33035 FlyBaseID:FBgn0031107 Length:4912 Species:Drosophila melanogaster


Alignment Length:337 Identity:88/337 - (26%)
Similarity:122/337 - (36%) Gaps:128/337 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 RVQPKLQ-----AELVAVRLEA--APRSNSG---TKRSIFGAAKAPSS----------------- 137
            |.||.||     |:.:|....|  .|.|.:|   ...|...||.||..                 
  Fly  2935 RQQPDLQHILANAQFLASEYSAGVGPGSTAGAGAVSTSHEEAAAAPEQDLPCTVMVWGLNDKEQL 2999

  Fly   138 ---------------------PIIEHIACGSHINVAISSENCVYS------------------IP 163
                                 ||  |||.||.....:|.:..||:                  :|
  Fly  3000 GGLKGSKVKVPTFSQTISRLRPI--HIAGGSKSLFIVSQDGKVYACGEGTNGRLGLGVTHNVPLP 3062

  Fly   164 SCLHQFSE-RQFRVKQ--LQCGHEHAVLLNANGDVFTWGNGLRGQLGLAELRVEETPQLLEALAG 225
               ||... ||:.||:  :..|.:||:.|..:|.||:||.|..|:||.......:.|:|:|||..
  Fly  3063 ---HQLPVLRQYVVKKVAVHSGGKHALALTLDGKVFSWGEGEDGKLGHGNRTTLDKPRLVEALRA 3124

  Fly   226 IKITQIAAGGWHSAAISAFGDLYTWGLNCSGQLGLRVMKPGGVLKEPTVFPLPQLQDLPECACSQ 290
            .||..:|.|..||||||:.|:||||||...|:||                               
  Fly  3125 KKIRDVACGSSHSAAISSQGELYTWGLGEYGRLG------------------------------- 3158

  Fly   291 SGESNDDCAP-----------LRVFAGSR--HTLLIRRCGRLWVSGWCKHGQLGR---------- 332
            .|::.....|           ::|..|||  .||.:...|.::..|....|:|||          
  Fly  3159 HGDNTTQLKPKLVTALAGRRVVQVACGSRDAQTLALTEDGAVFSWGDGDFGKLGRGGSEGSDTPH 3223

  Fly   333 QLQDLSYVDAFQ 344
            :::.||.:...|
  Fly  3224 EIERLSGIGVVQ 3235

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6678NP_650996.1 ATS1 175..>331 CDD:444065 51/170 (30%)
HERC2NP_608388.2 ATS1 625..>894 CDD:444065
Cyt-b5 1292..1364 CDD:459698
MIB_HERC2 1928..1988 CDD:461991
UBA_HERC2 2515..2559 CDD:270585
Cul7 2624..2699 CDD:463286
APC10-HERC2 2762..2932 CDD:176485
ATS1 2987..3320 CDD:444065 72/285 (25%)
RCC1 3302..3350 CDD:395335
ATS1 4050..4389 CDD:444065
HECTc 4509..4880 CDD:238033
Blue background indicates that the domain is not in the aligned region.

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