DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6678 and Rccd1

DIOPT Version :10

Sequence 1:NP_650996.1 Gene:CG6678 / 42581 FlyBaseID:FBgn0038917 Length:373 Species:Drosophila melanogaster
Sequence 2:NP_775621.2 Gene:Rccd1 / 269955 MGIID:2444156 Length:377 Species:Mus musculus


Alignment Length:419 Identity:124/419 - (29%)
Similarity:174/419 - (41%) Gaps:118/419 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 GFNAFGQHECVSGDVDCAAGFSELNAPV-------STQNQCTISIGWRYAALAF-GRKLCLRGLL 63
            ||..|||          |.|....:..|       ::.:.|.:|.||.|.||.. |.::.|.|.:
Mouse    13 GFCGFGQ----------ALGSGNSHHSVYSPEPLHASDDICQVSAGWSYTALVTRGGRVELSGSV 67

  Fly    64 DDGPNECVTLEATGNIRALAAADSHCLVLLQS--GQLYRVQ-----PKLQAELVAVRL------- 114
            ....:.|..:.|:..:          ||||::  |....||     ..||.|.:.|:.       
Mouse    68 SGAADGCRDVWASEEL----------LVLLRNKGGSSTEVQAWVPGSALQGEPLWVQNLVSGAKG 122

  Fly   115 ----EAAPRSNSGTKRSIFGAAKA---PSSPIIEHIACGSHINVAISSENCVYSIPSCLHQFSER 172
                |.:..|..|| ..:...|:|   |..|..:.:|                           .
Mouse   123 QGEDEPSRESRMGT-LPLLPCARAYVTPEPPFCQPLA---------------------------P 159

  Fly   173 QFRVKQLQCGHEHAVLLNANGDVFTWGNGLRGQLGLAELRVEETPQLLEALAGIKITQIAAGGWH 237
            :.||:||:.|.||.:||.|.|.||:||.|..||||...|..|..|:|||||.|:::.::||||||
Mouse   160 ELRVRQLELGAEHVLLLCAAGQVFSWGAGRHGQLGHGTLEAELEPRLLEALQGLRMAKVAAGGWH 224

  Fly   238 SAAISAFGDLYTWGLNCSGQLGLRV---------------MKPGGVLKE--------PTVF---- 275
            |..:|..||:|.||.|.||||.|..               :...|:.:|        |..|    
Mouse   225 SVCLSETGDIYIWGWNESGQLALPTRSGTENKAEREEATELNEDGLKEELAVADAGAPAHFIAIQ 289

  Fly   276 PLPQLQDLPECACSQSGESNDDCAPLRVFAGSRHTLLIRRCGRLWVSGWCKHGQLGRQLQDLSYV 340
            |.|.|.|||         ...|.  :....|||||.::.|.|.|:..||.|:||||.  :|.:.:
Mouse   290 PFPALLDLP---------LGSDA--VMASCGSRHTAVVTRTGELYTWGWGKYGQLGH--KDSTSL 341

  Fly   341 DAFQALE-GITMNPTVDDVLCGPWSTLLH 368
            |....:| .:.....|..|.||||:|.::
Mouse   342 DRPCCVEYFVERQLEVRAVTCGPWNTYVY 370

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6678NP_650996.1 ATS1 175..>331 CDD:444065 72/182 (40%)
Rccd1NP_775621.2 Interaction with KDM8. /evidence=ECO:0000250|UniProtKB:A6NED2 1..172 45/206 (22%)
ATS1 <163..344 CDD:444065 75/193 (39%)
RCC1 2 179..230 26/50 (52%)
RCC1 3 232..289 15/56 (27%)
RCC1 4 319..372 19/54 (35%)

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