DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6678 and rcc2

DIOPT Version :9

Sequence 1:NP_650996.1 Gene:CG6678 / 42581 FlyBaseID:FBgn0038917 Length:373 Species:Drosophila melanogaster
Sequence 2:XP_031761501.1 Gene:rcc2 / 100494942 XenbaseID:XB-GENE-996297 Length:513 Species:Xenopus tropicalis


Alignment Length:314 Identity:73/314 - (23%)
Similarity:123/314 - (39%) Gaps:94/314 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   114 LEAAPRSNSG-----TKRS-IFGAAKAPSSPII---EHI----------ACGSHINVAISSENCV 159
            |:.:|.|:.|     .||. ..||||||::.|:   ||.          |.|..:....::.:.:
 Frog    44 LDGSPGSDGGFQGNNNKRGPAKGAAKAPTAVIVTEPEHSKEKIKLEGSKAKGQLLIFGATNWDLI 108

  Fly   160 --YSIPSCLHQFSERQF----------------RVKQLQCG--HEHAVLLNANGDVFTWGNGLRG 204
              ..:|.  .|.:.|..                :|:.:..|  ..|::|:...|.:::||...:|
 Frog   109 GRKEVPK--QQAAYRNLGQNLWGPHRYGCLTGVQVRTVAAGPCAAHSLLITVEGKLWSWGRNDKG 171

  Fly   205 QLGLAELRVEETPQLLEALAGIKITQIAAGGWHSAAISAFGDLYTWGLNCSGQLGL-----RVMK 264
            |||..:::..:.|:|:|:|.|......|.|..|:.|::..|.:|.:|.|..|||||     .|..
 Frog   172 QLGHGDVKRIDVPKLIESLKGEVFVHGACGRNHTLALTENGSVYAFGENKMGQLGLGNKTDAVPS 236

  Fly   265 PGGVLKEPTVFPLPQLQDLPECACSQSGESNDDCAPLRVFAGSRHTLLIRRCGRLWVSGWCKHGQ 329
            |..:|...        |.:.:.||                 |:..::::...|.|:..|..::||
 Frog   237 PAQILYNG--------QPITKVAC-----------------GAEFSMIMDCKGNLYSFGCPEYGQ 276

  Fly   330 LGRQLQDLSYVDAFQALE-------------------GITM---NPTVDDVLCG 361
            ||.. .|..|:...|.:|                   |..:   |..|.|:.||
 Frog   277 LGHN-SDGKYIARAQRIEYDCELIARRIAIFIEKTKDGQVLPVPNVVVRDIACG 329

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6678NP_650996.1 ATS1 <78..371 CDD:227511 73/314 (23%)
RCC1_2 176..205 CDD:290274 7/30 (23%)
RCC1 192..241 CDD:278826 15/48 (31%)
RCC1_2 228..257 CDD:290274 8/28 (29%)
rcc2XP_031761501.1 ATS1 122..472 CDD:227511 53/234 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.