DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6678 and rccd1

DIOPT Version :9

Sequence 1:NP_650996.1 Gene:CG6678 / 42581 FlyBaseID:FBgn0038917 Length:373 Species:Drosophila melanogaster
Sequence 2:XP_012813982.2 Gene:rccd1 / 100135212 XenbaseID:XB-GENE-877111 Length:411 Species:Xenopus tropicalis


Alignment Length:392 Identity:113/392 - (28%)
Similarity:173/392 - (44%) Gaps:84/392 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 FTGFNAFGQHECVSGDVDCAAGFSELNAPVSTQNQCTISIGWRYAALAFGRKLCLRGLLDDGPNE 69
            :.||...|..:.:|.|:.......|..||..|:....:. .|.|:|.          :.:||   
 Frog    55 YRGFEQLGFGQKLSLDLPEPIQLEEAAAPTDTEVTKAVP-AWSYSAF----------VTEDG--- 105

  Fly    70 CVTLEATGNIRA-----LAAADSHCLVLLQSGQ--LYRVQPKLQAELVAVRLEAAPRSNSGTKRS 127
              :|..:|:|.|     |:.....|:.:|.:.:  |.:::.:||.......:...|.:....|..
 Frog   106 --SLLLSGSIGASPHKYLSFKGLDCVDVLPTEKYLLVQLKERLQCWDTQAFIAEGPHAEPMWKMD 168

  Fly   128 IFGAAKAPSS-----PIIEHIACGSHINVAISSENCVYSIPSCLHQFSERQFRVKQLQCGHEHAV 187
            :      ||:     |::.:       ...:........:||.:|        .::|..|:||||
 Frog   169 L------PSAHNSLFPLVTN-------GYIVPKPPFFRELPSKIH--------ARKLALGNEHAV 212

  Fly   188 LLNANGDVFTWGNGLRGQLGLAELRVEETPQLLEALAGIKITQIAAGGWHSAAISAFGDLYTWGL 252
            ||.:...|.|||.|..||||..:|...|.||:::||.|:.::::||||||||.||..||:||||.
 Frog   213 LLTSELTVLTWGAGRHGQLGHGDLEDVEEPQIVDALHGVPMSEVAAGGWHSAGISESGDIYTWGW 277

  Fly   253 NCSGQLGL---------------RVMKPGGVLKEPTVFPLPQLQDLPECACSQSGESNDDCAPLR 302
            |.||||||               :..:.|...:..|:...|.|.|||     |..|::      :
 Frog   278 NESGQLGLPCKTQQCSVSTKQSHKEDEMGNTGEFITIQAFPALIDLP-----QESEAS------K 331

  Fly   303 VFAGSRHTLLIRRCGRLWVSGWCKHGQLGR----QLQDLSYVDAFQALEGITMNPTVDDVLCGPW 363
            :..|||||..:.|.|.|:..||.|:||||.    .|.....|:.|.     ..:..|:||:|..|
 Frog   332 ISCGSRHTAAVSRSGELYSWGWGKYGQLGHGDTDSLDQPKLVNYFS-----VKHLCVNDVICRNW 391

  Fly   364 ST 365
            ||
 Frog   392 ST 393

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6678NP_650996.1 ATS1 <78..371 CDD:227511 97/319 (30%)
RCC1_2 176..205 CDD:290274 13/28 (46%)
RCC1 192..241 CDD:278826 24/48 (50%)
RCC1_2 228..257 CDD:290274 18/28 (64%)
rccd1XP_012813982.2 ATS1 <201..373 CDD:227511 72/182 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 1 1.000 - - FOG0003064
OrthoInspector 1 1.000 - - oto103626
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3975
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.010

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