DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6678 and herc5.3

DIOPT Version :9

Sequence 1:NP_650996.1 Gene:CG6678 / 42581 FlyBaseID:FBgn0038917 Length:373 Species:Drosophila melanogaster
Sequence 2:XP_021330683.1 Gene:herc5.3 / 100073325 ZFINID:ZDB-GENE-070615-14 Length:1002 Species:Danio rerio


Alignment Length:235 Identity:73/235 - (31%)
Similarity:106/235 - (45%) Gaps:33/235 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   140 IEHIACGSHINVAISSENCVYSIPS---C--LHQFSERQFRVKQLQCGHEHAVLLNANGDVFTWG 199
            |..|.||....|.::.:..|..:..   |  |.....||  |.|:.||.:|::.|..:|.:|.||
Zfish    84 IRSIVCGEAGAVLLADDGKVLVMDQSTVCRPLKGLENRQ--VIQIACGDQHSMALTNDGQLFVWG 146

  Fly   200 NGLRGQLGL-AELRVEETPQLLEALAGIKITQIAAGGWHSAAISAFGDLYTWGLNCSGQLGLRVM 263
            ....||||| .|....::||.|::|.||.:.||:|||.||..:|..|.::.||.|.:|||||   
Zfish   147 ENALGQLGLRKEQAGTQSPQHLQSLCGIPVAQISAGGNHSFVLSLSGVVFGWGSNSAGQLGL--- 208

  Fly   264 KPGGVLKEPTVFPLPQLQDLPECACSQSGESNDDCAPLRVFAGSRHTLLIRRCGRLWVSGWCKHG 328
               |...:         :.:|....|.||:..     :.:..|..||..:.:.|.::..|....|
Zfish   209 ---GDTTD---------RFIPTIVKSLSGKKT-----VSISCGGEHTATLSKGGTVFTFGSGGFG 256

  Fly   329 QLG-RQLQDLSYVDAFQALEGITMNPTVDDVLCGPWSTLL 367
            ||| ..|:|..:......|.|    ..|..|.||...||:
Zfish   257 QLGHNSLKDEHHPRLVAELWG----SKVSQVTCGRHHTLV 292

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6678NP_650996.1 ATS1 <78..371 CDD:227511 73/235 (31%)
RCC1_2 176..205 CDD:290274 10/28 (36%)
RCC1 192..241 CDD:278826 23/49 (47%)
RCC1_2 228..257 CDD:290274 12/28 (43%)
herc5.3XP_021330683.1 RCC1 <74..349 CDD:332518 73/235 (31%)
HECTc 665..1000 CDD:331829
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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