DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dnd and ARLA1C

DIOPT Version :10

Sequence 1:NP_650995.1 Gene:dnd / 42580 FlyBaseID:FBgn0038916 Length:179 Species:Drosophila melanogaster
Sequence 2:NP_190556.2 Gene:ARLA1C / 824149 AraportID:AT3G49870 Length:184 Species:Arabidopsis thaliana


Alignment Length:190 Identity:63/190 - (33%)
Similarity:99/190 - (52%) Gaps:21/190 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGL----LSLLRKLRPNPEKEARILLLGLDNAGKTTILKQLA----SEDITTVTPTAGFNIKSVA 57
            |||    |:.||.|....|.|  :.|:||.|||||:::..:|    |||   :.||.|||::.|.
plant     1 MGLLEAFLNWLRSLFFKQEME--LSLIGLQNAGKTSLVNVVATGGYSED---MIPTVGFNMRKVT 60

  Fly    58 ADGFKLNVWDIGGQWKIRPYWKNYFANTDVLIYVIDCTDRTRLPEAGSELFEMLMDNRLKQVPVL 122
            .....:.:||:|||.:.|..|:.|......::||:|..|...|..:.|||.::|....|..:|:|
plant    61 KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSVSKSELHDLLSKTSLNGIPLL 125

  Fly   123 IFANKQDMPDAMSAAEVAEKMSLVQLQGRTWEIKAC----TAVDGTGLKEGMDWVCKNMK 178
            :..||.|.|.|:|...:.::|.|..|..|    :.|    :..:.|.:.:.:||:.|:.|
plant   126 VLGNKIDKPGALSKEALTDEMGLTSLTDR----EVCCFMISCKNSTNIDQVIDWLVKHSK 181

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dndNP_650995.1 Arl3 3..176 CDD:206721 59/184 (32%)
ARLA1CNP_190556.2 Arl10_like 21..179 CDD:206724 53/166 (32%)

Return to query results.
Submit another query.