DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dnd and ARFB1C

DIOPT Version :9

Sequence 1:NP_650995.1 Gene:dnd / 42580 FlyBaseID:FBgn0038916 Length:179 Species:Drosophila melanogaster
Sequence 2:NP_186962.1 Gene:ARFB1C / 821079 AraportID:AT3G03120 Length:192 Species:Arabidopsis thaliana


Alignment Length:164 Identity:74/164 - (45%)
Similarity:106/164 - (64%) Gaps:0/164 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 KEARILLLGLDNAGKTTILKQLASEDITTVTPTAGFNIKSVAADGFKLNVWDIGGQWKIRPYWKN 80
            :|.|:::||||.|||||||.:|...::.:..||.|||::.|........|||:|||.|:||.|::
plant    16 QEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRH 80

  Fly    81 YFANTDVLIYVIDCTDRTRLPEAGSELFEMLMDNRLKQVPVLIFANKQDMPDAMSAAEVAEKMSL 145
            ||.|||.||||:|..||.|:.:|..|..:::.|..:....:|:|||||||..|||..||.|.:.|
plant    81 YFNNTDGLIYVVDSLDRERIGKAKQEFQDIIRDPFMLNSVILVFANKQDMRGAMSPREVCEGLGL 145

  Fly   146 VQLQGRTWEIKACTAVDGTGLKEGMDWVCKNMKK 179
            :.|:.|.|.|:...|:.|.||.||:||:...:|:
plant   146 LDLKNRKWHIQGTCALQGDGLYEGLDWLSATLKE 179

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dndNP_650995.1 Arl3 3..176 CDD:206721 73/159 (46%)
ARFB1CNP_186962.1 Arf1_5_like 18..176 CDD:206717 72/157 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1271528at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.