DRSC/TRiP Functional Genomics Resources

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Protein Alignment dnd and Trim23

DIOPT Version :10

Sequence 1:NP_650995.1 Gene:dnd / 42580 FlyBaseID:FBgn0038916 Length:179 Species:Drosophila melanogaster
Sequence 2:NP_001348467.1 Gene:Trim23 / 81003 MGIID:1933161 Length:574 Species:Mus musculus


Alignment Length:165 Identity:73/165 - (44%)
Similarity:110/165 - (66%) Gaps:1/165 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 PEKEARILLLGLDNAGKTTILKQLASEDITTVTPTAGFNIKSVAADGFKLNVWDIGGQWKIRPYW 78
            |:.|.|::.||||.|||||||.:|..::.....||.|||:::|.....|..:||:||:.|:||.|
Mouse   401 PKMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLW 465

  Fly    79 KNYFANTDVLIYVIDCTDRTRLPEAGSELFEMLMDNRLKQVPVLIFANKQDMPDAMSAAEVAEKM 143
            |:|:.||..:::|:|.:.|.|:.||.|||.::|.:..|:...:||||||||:..|:|..|:.|.:
Mouse   466 KHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELL 530

  Fly   144 SLVQL-QGRTWEIKACTAVDGTGLKEGMDWVCKNM 177
            ||.:| .||:|.|:.|.|..|.||.||:||:.:.:
Mouse   531 SLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 565

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dndNP_650995.1 Arl3 3..176 CDD:206721 73/162 (45%)
Trim23NP_001348467.1 mRING-HC-C3HC3D_TRIM23_C-IX 28..77 CDD:438307
Bbox2_TRIM23_C-IX_rpt1 123..172 CDD:380831
Bbox2_TRIM23_C-IX_rpt2 174..223 CDD:380832
CC_brat-like 226..370 CDD:475168
ARF-like 390..574 73/165 (44%)
ARD1 406..574 CDD:206723 71/160 (44%)
Blue background indicates that the domain is not in the aligned region.

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