DRSC/TRiP Functional Genomics Resources

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Protein Alignment dnd and trim23

DIOPT Version :10

Sequence 1:NP_650995.1 Gene:dnd / 42580 FlyBaseID:FBgn0038916 Length:179 Species:Drosophila melanogaster
Sequence 2:XP_005155659.1 Gene:trim23 / 767706 ZFINID:ZDB-GENE-060929-804 Length:576 Species:Danio rerio


Alignment Length:165 Identity:75/165 - (45%)
Similarity:110/165 - (66%) Gaps:1/165 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 PEKEARILLLGLDNAGKTTILKQLASEDITTVTPTAGFNIKSVAADGFKLNVWDIGGQWKIRPYW 78
            |:.|.|::.||||.|||||||.:|..::.....||.|||:::|.....|..:||:||:.|:||.|
Zfish   403 PKMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLW 467

  Fly    79 KNYFANTDVLIYVIDCTDRTRLPEAGSELFEMLMDNRLKQVPVLIFANKQDMPDAMSAAEVAEKM 143
            |:|:.||..:::|||...|.||.|:.|||.::|.:..|:...:||||||||:|.|:|..|:.|.:
Zfish   468 KHYYLNTQAVVFVIDSCHRDRLMESHSELAKLLTEKELRDALLLIFANKQDVPGAVSVEEMTELL 532

  Fly   144 SLVQL-QGRTWEIKACTAVDGTGLKEGMDWVCKNM 177
            ||.:| .||:|.|:.|.|..|.||.||:||:.:.:
Zfish   533 SLHKLCCGRSWHIQGCDARSGMGLHEGLDWLSRQL 567

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dndNP_650995.1 Arl3 3..176 CDD:206721 75/162 (46%)
trim23XP_005155659.1 mRING-HC-C3HC3D_TRIM23_C-IX 30..79 CDD:438307
Bbox2_TRIM23_C-IX_rpt1 125..174 CDD:380831
Bbox2_TRIM23_C-IX_rpt2 176..225 CDD:380832
CC_brat-like 228..372 CDD:475168
ARD1 408..576 CDD:206723 73/160 (46%)
Blue background indicates that the domain is not in the aligned region.

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