DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17819 and Arl1

DIOPT Version :9

Sequence 1:NP_650994.1 Gene:CG17819 / 42579 FlyBaseID:FBgn0038915 Length:186 Species:Drosophila melanogaster
Sequence 2:NP_071780.1 Gene:Arl1 / 64187 RGDID:621326 Length:181 Species:Rattus norvegicus


Alignment Length:179 Identity:54/179 - (30%)
Similarity:93/179 - (51%) Gaps:21/179 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 GSQKSCLLILGLDNAGKSTLTDRL--AEI--------FNGESKESNNQVSEWSFTINNFRVQLWD 71
            |:::..:||||||.|||:|:..||  .|:        ||.|           :.|..|.:.|:||
  Rat    14 GTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE-----------TVTYKNLKFQVWD 67

  Fly    72 INGELKNRQIWPKYYKKVNVLIFVLDSTDALRLSEARCVLCDVLMHQELDNAPLLIVSNKKDASG 136
            :.|:...|..|..||...:.:|:|:||.|..|:..::..|..:|..:||..|.|::.:||:|...
  Rat    68 LGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 132

  Fly   137 SLSMSTVIDLMGLYRLTGRDWTFEECSMRTGSGVQEIVNWINEKINNNR 185
            :::.|.:.:.:||..|..|.|...:.|...|:|:.|.:.|:.|.:.:.:
  Rat   133 AMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSRQ 181

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17819NP_650994.1 Arf_Arl 22..180 CDD:206644 52/167 (31%)
Ras 23..183 CDD:278499 53/169 (31%)
Arl1NP_071780.1 Arl1 19..176 CDD:206718 52/167 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53833
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11711
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.110

Return to query results.
Submit another query.