DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17819 and Arl5c

DIOPT Version :9

Sequence 1:NP_650994.1 Gene:CG17819 / 42579 FlyBaseID:FBgn0038915 Length:186 Species:Drosophila melanogaster
Sequence 2:XP_038942559.1 Gene:Arl5c / 497990 RGDID:1563128 Length:221 Species:Rattus norvegicus


Alignment Length:132 Identity:40/132 - (30%)
Similarity:66/132 - (50%) Gaps:2/132 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 NQVSEWSFTINNFRVQLWDINGELKNRQIWPKYYKKVNVLIFVLDSTDALRLSEARCVLCDVLMH 117
            :.|.|..|...:|  .:||:.|:...|..|..||.....:|.|:||||..|||.:|..|..:|.|
  Rat    92 SNVEEIVFQRTHF--LMWDLGGQEALRSTWETYYSNAEFVILVIDSTDRNRLSTSREELYKILAH 154

  Fly   118 QELDNAPLLIVSNKKDASGSLSMSTVIDLMGLYRLTGRDWTFEECSMRTGSGVQEIVNWINEKIN 182
            :.|.:|.:||.:||:|...|::.:.:...:.|..:....|..:.|...||.|:...:.|::.:..
  Rat   155 EALQDASVLIFANKQDVKDSMTTAEISQFLTLSAIKDHPWHIQGCCALTGEGLLAGLQWMHSQAT 219

  Fly   183 NN 184
            .|
  Rat   220 TN 221

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17819NP_650994.1 Arf_Arl 22..180 CDD:206644 39/126 (31%)
Ras 23..183 CDD:278499 39/129 (30%)
Arl5cXP_038942559.1 P-loop_NTPase <79..217 CDD:422963 39/126 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0070
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53833
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

Return to query results.
Submit another query.