DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17819 and arl5c

DIOPT Version :9

Sequence 1:NP_650994.1 Gene:CG17819 / 42579 FlyBaseID:FBgn0038915 Length:186 Species:Drosophila melanogaster
Sequence 2:NP_957140.1 Gene:arl5c / 393819 ZFINID:ZDB-GENE-040426-1866 Length:179 Species:Danio rerio


Alignment Length:180 Identity:56/180 - (31%)
Similarity:97/180 - (53%) Gaps:9/180 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 FIKKILPAGSQKSCLLILGLDNAGKSTLTDRLAEIFNGESKESN----NQVSEWSFTINNFRVQL 69
            |.|.:...|.::..::|:|||||||:|:   |.:....|:.:::    :.|.|  ..|...|..:
Zfish     5 FAKLMTLFGDREHKVIIVGLDNAGKTTI---LYQFLTKEAVQTSPTIGSNVEE--IAIKKTRFLV 64

  Fly    70 WDINGELKNRQIWPKYYKKVNVLIFVLDSTDALRLSEARCVLCDVLMHQELDNAPLLIVSNKKDA 134
            |||.|:...|..|..||....::|.|:||||..||:..:..|..:|.|::|.||.:|:::||:|.
Zfish    65 WDIGGQESLRATWNSYYTNTEIIILVVDSTDRERLTVTKEELHRMLAHEDLQNASVLVLANKQDM 129

  Fly   135 SGSLSMSTVIDLMGLYRLTGRDWTFEECSMRTGSGVQEIVNWINEKINNN 184
            ..|::.:.:...:.|..||.|.|..:.|...||.|:...::|:..::..|
Zfish   130 EDSMTAAEISQSLTLSSLTARSWHVQACCALTGEGLPASLDWMRSRVVAN 179

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17819NP_650994.1 Arf_Arl 22..180 CDD:206644 52/161 (32%)
Ras 23..183 CDD:278499 52/163 (32%)
arl5cNP_957140.1 Arl5_Arl8 3..175 CDD:133353 55/174 (32%)
Ras 18..164 CDD:278499 50/150 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0070
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53833
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.820

Return to query results.
Submit another query.