DRSC/TRiP Functional Genomics Resources

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Protein Alignment lsn and SNF8

DIOPT Version :9

Sequence 1:NP_650987.1 Gene:lsn / 42572 FlyBaseID:FBgn0260940 Length:254 Species:Drosophila melanogaster
Sequence 2:NP_015323.1 Gene:SNF8 / 856105 SGDID:S000005923 Length:233 Species:Saccharomyces cerevisiae


Alignment Length:243 Identity:78/243 - (32%)
Similarity:128/243 - (52%) Gaps:21/243 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 RRVGLGAIQQQKLAAEKYKDKGTDLQENQLEQMTKQMEVFRVKLEEFAMKHKEDIRKNSQFRKQF 67
            ::.||.|..:  |...||.|....:.|.|..::..|:.||:.:|.|||.||..:::.:.:||.:|
Yeast     2 KQFGLAAFDE--LKDGKYNDVNKTILEKQSVELRDQLMVFQERLVEFAKKHNSELQASPEFRSKF 64

  Fly    68 QEMCAAIGVDPLATGKGFWSVLGMGDFYYELGVQVVEVCLAANHKTGGLMELDDLR----RRLIA 128
            ..||::||:|||:.......:..:.|||||:.::|:|:|.......||::...:|.    |:|..
Yeast    65 MHMCSSIGIDPLSLFDRDKHLFTVNDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRKLNV 129

  Fly   129 ARGQSSVHQEITKEDILMAAKKLSIFGNGFVVHKLGKGKYIVQSIPGELSMEETNILNAASNTEQ 193
              |...:.:.|   |:|.:.:...||..        :||..::|:|.||:.::|.||...|..  
Yeast   130 --GLDDLEKSI---DMLKSLECFEIFQI--------RGKKFLRSVPNELTSDQTKILEICSIL-- 179

  Fly   194 GCVTQSQLIKDLGWTDYRAQQSLDKVLGEGLCWIDKQAGDEPAYWFPS 241
            |..:.|.|..:|||...|::.:||:::..||.|||.|.|.|..||.||
Yeast   180 GYSSISLLKANLGWEAVRSKSALDEMVANGLLWIDYQGGAEALYWDPS 227

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lsnNP_650987.1 EAP30 6..228 CDD:282067 69/225 (31%)
SNF8NP_015323.1 EAP30 4..214 CDD:398021 69/226 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157345784
Domainoid 1 1.000 111 1.000 Domainoid score I1379
eggNOG 1 0.900 - - E1_KOG3341
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5239
Inparanoid 1 1.050 126 1.000 Inparanoid score I1277
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54473
OrthoFinder 1 1.000 - - FOG0004178
OrthoInspector 1 1.000 - - oto99784
orthoMCL 1 0.900 - - OOG6_102942
Panther 1 1.100 - - LDO PTHR12806
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3694
SonicParanoid 1 1.000 - - X3997
TreeFam 1 0.960 - -
1514.790

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