DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment lsn and snf8

DIOPT Version :9

Sequence 1:	NP_650987.1	Gene:	lsn / 42572	FlyBaseID:	FBgn0260940	Length:	254	Species:	Drosophila melanogaster
Sequence 2:	NP_001011185.1	Gene:	snf8 / 496607	XenbaseID:	XB-GENE-961618	Length:	257	Species:	Xenopus tropicalis

Alignment Length:	249	Identity:	133/249 - (53%)
Similarity:	180/249 - (72%)	Gaps:	6/249 - (2%)

- Green bases have known domain annotations that are detailed below.

  Fly     2 RRRVGLGAIQQQKLAAEKYKDKGTDLQENQLEQMTKQMEVFRVKLEEFAMKHKEDIRKNSQFRKQ 66
            ||.||.|||.::|||..|||::||.|.|:||.||:||:|:|:..|||||.|||::||||.|||.|
Frog     3 RRGVGAGAIAKKKLAEAKYKERGTVLAEDQLLQMSKQLEMFKTNLEEFASKHKQEIRKNPQFRVQ 67

  Fly    67 FQEMCAAIGVDPLATGKGFWS-VLGMGDFYYELGVQVVEVCLAANHKTGGLMELDDLRRRLIAAR 130
            ||:|||.|||||||:|||||| :||:||||||||||::|||||..|..|||:.|.:|.:.::..|
Frog    68 FQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHHNGGLITLAELHQHVLKGR 132

  Fly   131 GQSSVHQEITKEDILMAAKKLSIFGNGFVVHKLGKGKYIVQSIPGELSMEETNILNAASNTEQGC 195
            |:  :.|:::::||:.|.|||.:.||||.:..:| |.|:|||:|.||:|:.|.:|..|.  ::|.
Frog   133 GK--LAQDVSQDDIIRAIKKLKVLGNGFGIIPVG-GSYLVQSVPAELNMDHTVVLQLAE--KKGF 192

  Fly   196 VTQSQLIKDLGWTDYRAQQSLDKVLGEGLCWIDKQAGDEPAYWFPSLFPGRNAQ 249
            ||.:::...|.|...||:..|:.:|.|||.|||.||..|..||.|:||....||
Frog   193 VTVNEIKSSLNWETERAKHVLEHLLKEGLAWIDSQAQGEAQYWLPALFTALYAQ 246

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
lsn	NP_650987.1	EAP30	6..228	CDD:282067	118/222 (53%)
snf8	NP_001011185.1	EAP30	6..225	CDD:367847	119/223 (53%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	242	1.000	Domainoid score	I2195
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	1	1.000	-	-
Homologene	1	1.000	-	-		H5239
Inparanoid	1	1.050	264	1.000	Inparanoid score	I2995
OMA	1	1.010	-	-		QHG54473
OrthoDB	1	1.010	-	-		D554010at33208
OrthoFinder	1	1.000	-	-		FOG0004178
OrthoInspector	1	1.000	-	-		oto104158
Panther	1	1.100	-	-	LDO	PTHR12806
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R3694
SonicParanoid	1	1.000	-	-		X3997
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	12	12.110