DRSC/TRiP Functional Genomics Resources

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Protein Alignment lsn and Snf8

DIOPT Version :9

Sequence 1:NP_650987.1 Gene:lsn / 42572 FlyBaseID:FBgn0260940 Length:254 Species:Drosophila melanogaster
Sequence 2:NP_001007805.1 Gene:Snf8 / 287645 RGDID:1310144 Length:258 Species:Rattus norvegicus


Alignment Length:253 Identity:129/253 - (50%)
Similarity:183/253 - (72%) Gaps:6/253 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 RRRVGLGAIQQQKLAAEKYKDKGTDLQENQLEQMTKQMEVFRVKLEEFAMKHKEDIRKNSQFRKQ 66
            ||.||.|||.::|||..|||::||.|.|:||.||:||:::|:..|||||.|||::||||.:||.|
  Rat     3 RRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNPEFRVQ 67

  Fly    67 FQEMCAAIGVDPLATGKGFWS-VLGMGDFYYELGVQVVEVCLAANHKTGGLMELDDLRRRLIAAR 130
            ||:|||.|||||||:|||||| :||:||||||||||::|||||..|:.|||:.|::|.::::..|
  Rat    68 FQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGR 132

  Fly   131 GQSSVHQEITKEDILMAAKKLSIFGNGFVVHKLGKGKYIVQSIPGELSMEETNILNAASNTEQGC 195
            |:.:  |:::::|::.|.|||...|.||.:..:| |.|::||:|.||:|:.|.:|..|.  :.|.
  Rat   133 GKFA--QDVSQDDLIRAIKKLKALGTGFGIIPVG-GTYLIQSVPAELNMDHTVVLQLAE--KNGY 192

  Fly   196 VTQSQLIKDLGWTDYRAQQSLDKVLGEGLCWIDKQAGDEPAYWFPSLFPGRNAQTTAA 253
            ||.|::...|.|...||:|.|:.:|.|||.|:|.||..|..||.|:||....:|..:|
  Rat   193 VTVSEIKASLKWETERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALFTDLYSQEISA 250

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lsnNP_650987.1 EAP30 6..228 CDD:282067 115/222 (52%)
Snf8NP_001007805.1 EAP30 7..225 CDD:282067 115/222 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166351780
Domainoid 1 1.000 238 1.000 Domainoid score I2232
eggNOG 1 0.900 - - E1_KOG3341
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5239
Inparanoid 1 1.050 259 1.000 Inparanoid score I3054
OMA 1 1.010 - - QHG54473
OrthoDB 1 1.010 - - D554010at33208
OrthoFinder 1 1.000 - - FOG0004178
OrthoInspector 1 1.000 - - oto97468
orthoMCL 1 0.900 - - OOG6_102942
Panther 1 1.100 - - LDO PTHR12806
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3997
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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