DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment lsn and Snf8

DIOPT Version :9

Sequence 1:	NP_650987.1	Gene:	lsn / 42572	FlyBaseID:	FBgn0260940	Length:	254	Species:	Drosophila melanogaster
Sequence 2:	XP_006533530.1	Gene:	Snf8 / 27681	MGIID:	1343161	Length:	275	Species:	Mus musculus

Alignment Length:	216	Identity:	113/216 - (52%)
Similarity:	161/216 - (74%)	Gaps:	6/216 - (2%)

- Green bases have known domain annotations that are detailed below.

  Fly     2 RRRVGLGAIQQQKLAAEKYKDKGTDLQENQLEQMTKQMEVFRVKLEEFAMKHKEDIRKNSQFRKQ 66
            ||.||.|||.::|||..|||::||.|.|:||.||:||:::|:..|||||.|||::||||.:||.|
Mouse     3 RRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNPEFRVQ 67

  Fly    67 FQEMCAAIGVDPLATGKGFWS-VLGMGDFYYELGVQVVEVCLAANHKTGGLMELDDLRRRLIAAR 130
            ||:|||.|||||||:|||||| :||:||||||||||::|||||..|:.|||:.|::|.::::..|
Mouse    68 FQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGR 132

  Fly   131 GQSSVHQEITKEDILMAAKKLSIFGNGFVVHKLGKGKYIVQSIPGELSMEETNILNAASNTEQGC 195
            |:.:  |:::::|::.|.|||...|.||.:..:| |.|::||:|.||:|:.|.:|..|.  :.|.
Mouse   133 GKFA--QDVSQDDLIRAIKKLKALGTGFGIIPVG-GTYLIQSVPAELNMDHTVVLQLAE--KNGY 192

  Fly   196 VTQSQLIKDLGWTDYRAQQSL 216
            ||.|::...|.|...||:|.|
Mouse   193 VTVSEIKTSLKWETERARQVL 213

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
lsn	NP_650987.1	EAP30	6..228	CDD:282067	110/212 (52%)
Snf8	XP_006533530.1	EAP30	6..213	CDD:367847	110/211 (52%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C167848202
Domainoid	1	1.000	238	1.000	Domainoid score	I2299
eggNOG	1	0.900	-	-		E1_KOG3341
Hieranoid	1	1.000	-	-
Homologene	1	1.000	-	-		H5239
Inparanoid	1	1.050	259	1.000	Inparanoid score	I3122
Isobase	0	0.000	Not matched by this tool.
OMA	1	1.010	-	-		QHG54473
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0004178
OrthoInspector	1	1.000	-	-		oto93935
orthoMCL	1	0.900	-	-		OOG6_102942
Panther	1	1.100	-	-	LDO	PTHR12806
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R3694
SonicParanoid	1	1.000	-	-		X3997
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
	15	14.790