DRSC/TRiP Functional Genomics Resources

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Protein Alignment lsn and dot2

DIOPT Version :9

Sequence 1:NP_650987.1 Gene:lsn / 42572 FlyBaseID:FBgn0260940 Length:254 Species:Drosophila melanogaster
Sequence 2:NP_595503.1 Gene:dot2 / 2541147 PomBaseID:SPBC651.05c Length:252 Species:Schizosaccharomyces pombe


Alignment Length:240 Identity:81/240 - (33%)
Similarity:140/240 - (58%) Gaps:8/240 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MRRRVGLGAIQQQKLAAEKYKDKGTDLQENQLEQMTKQMEVFRVKLEEFAMKHKEDIRKNSQFRK 65
            ||:|:|:||:...:. .::|::.|.:|.|.|.:::..|:..|:..|:.||.:|..:|::|||||.
pombe     1 MRKRIGIGALNDDEY-LKQYEEVGNELIEQQSDEIASQLSTFQEALKTFAREHATEIKQNSQFRN 64

  Fly    66 QFQEMCAAIGVDPLATG--KGFWSVLGMGDFYYELGVQVVEVCLAANHKTGGLMELDDLRRRLIA 128
            .|.::...||:||..:|  :..|:.:||.:|||::.|:|:|||.|...:.|||:.:..: .|.:.
pombe    65 TFVKLALKIGLDPFVSGSDESAWAAVGMNEFYYQVAVRVIEVCYATQMENGGLLSVSQV-CRFLN 128

  Fly   129 ARGQSSVHQEITKEDILMAAKKLSIFGNGFVVHKLGKGKYIVQSIPGELSMEETNILNAASNTEQ 193
            ...::..|:.:.:.|::.|...|:..|.|||:.|:. ||..::|:|.||:.::..:|.|....  
pombe   129 EENEAFGHEWLRETDVVRAVDSLAPLGPGFVLEKIA-GKQYIRSLPLELNTDQNVVLEAVEIL-- 190

  Fly   194 GCVTQSQLIKDLGWTDYRAQQSLDKVLGEGLCWIDKQAGDEPAYW 238
            |.||.|.|..:..|...|..|.|:.::.:.|.|||.| |.|.|||
pombe   191 GYVTISILRDNYAWERSRCIQVLNDLVSKSLLWIDSQ-GVEMAYW 234

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lsnNP_650987.1 EAP30 6..228 CDD:282067 70/223 (31%)
dot2NP_595503.1 EAP30 6..225 CDD:282067 70/223 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 132 1.000 Domainoid score I1309
eggNOG 1 0.900 - - E1_KOG3341
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5239
Inparanoid 1 1.050 148 1.000 Inparanoid score I1322
OMA 1 1.010 - - QHG54473
OrthoFinder 1 1.000 - - FOG0004178
OrthoInspector 1 1.000 - - oto101447
orthoMCL 1 0.900 - - OOG6_102942
Panther 1 1.100 - - LDO PTHR12806
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3694
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.860

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