DRSC/TRiP Functional Genomics Resources

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Protein Alignment CASK and vari

DIOPT Version :10

Sequence 1:NP_001262811.1 Gene:CASK / 42567 FlyBaseID:FBgn0013759 Length:929 Species:Drosophila melanogaster
Sequence 2:NP_724288.3 Gene:vari / 35343 FlyBaseID:FBgn0250785 Length:636 Species:Drosophila melanogaster


Alignment Length:577 Identity:193/577 - (33%)
Similarity:295/577 - (51%) Gaps:118/577 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   409 CRDVLEQLSSTSGGNSLGGKYAKEELMRLLAAPHMQALLHSHDVVARDVYGEEALRVTPPPMVPY 473
            |.|::.:.|.:.       :....||.:|||.||.:|||.:||.:.. :| |:.|:..       
  Fly    91 CDDIIRKFSPSR-------RLESRELAKLLAQPHFRALLRAHDEIGA-LY-EQRLKAA------- 139

  Fly   474 LNGDELDNVE-------GGEL---------QHVTRVRLVQFQKNTDEPMGITLKMTEDGRCIVAR 522
              |.....:|       ||.|         ..|..:::|..:::..:|:|:|:::.|..:.:|||
  Fly   140 --GGSTSQLEIASQRQTGGYLFTEDVLNTKMPVETIKMVGLRRDPSKPLGLTVELDEFKQLVVAR 202

  Fly   523 IMHGGMIHRQATLHVGDEIREINGQPVQHQSVGQLQRMLREARGSVTFKIVPSYRSAPPPCEI-- 585
            |:.||:|.:|:.|||||.|.|:||.||  ::..:||..:..|:.::|.||.|:...     ||  
  Fly   203 ILAGGVIDKQSMLHVGDVILEVNGTPV--RTPDELQVEVSRAKENLTLKIGPNVDE-----EIKS 260

  Fly   586 --------------------------FVRAQFDYNPLDDELIPCAQAGISFQVGDILQIISKDDH 624
                                      ::||.|.|||.:|.|:||...|:.|:.|||||||:..|.
  Fly   261 GRYTVSGGQVKQNGIASLETGKKLTCYMRALFTYNPSEDSLLPCRDIGLPFKSGDILQIINVKDP 325

  Fly   625 HWWQAR-LDTVGGSAGLIPSPELQEWRIACQTVDKTKQEQVNCSIFGRK--KKQCRDKYLAKHNA 686
            :||||: :.......|||||.||:|.|.|....:.....::  .|.|.:  |::.:..|.:..|.
  Fly   326 NWWQAKNITAESDKIGLIPSQELEERRKAFVAPEADYVHKI--GICGTRISKRKRKTMYRSVANC 388

  Fly   687 IFDTLDVVTYEEVVKVPVGDPNFQRKTLVLLGAHGVGRRHIKNTLISKYPDKYAYPIPHTTRPAK 751
            .||..:::.||||.::    |.|:||||||:|..|||||.:||.||:...||:...||||:||.:
  Fly   389 EFDKAELLLYEEVTRM----PPFRRKTLVLIGVSGVGRRTLKNRLINSDVDKFGAVIPHTSRPKR 449

  Fly   752 PEEENGRSYYFVSHDEMMADIGANEYLEYGTHEDAMYGTKLDTIRRIHTEGKMAILDVEPQALKI 816
            ..||||.||:|:..:||...:..||:||||.|...:|||.|.:|:.:...|:|.|||..|.||||
  Fly   450 ALEENGSSYWFMDREEMEEAVRNNEFLEYGEHNGNLYGTHLQSIKDVINSGRMCILDCAPNALKI 514

  Fly   817 LRTA-EFTPYVVFIAAPSLQNI----AD-----------YD------------GSLERLA----- 848
            |..: |..|:|:|:|||.::.:    ||           :|            .:||.||     
  Fly   515 LHNSQELMPFVIFVAAPGMEQLKTIYADRRATGSNRNLSFDRQSSIRFSSRRARTLESLASLYED 579

  Fly   849 -------KESEMLRQLYGHFFDLTIVNNDISETIATLETAIDRVHTTPQWVPVSWLY 898
                   :||..:::.|..:||:.|||.|..||...:...:|::....|||||:|:|
  Fly   580 DDLVATVEESSFVQRKYEKYFDMVIVNEDFDETFRQVVETLDQMSHEEQWVPVNWIY 636

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CASKNP_001262811.1 STKc_CASK 8..308 CDD:270996
L27 347..396 CDD:460717
L27 406..462 CDD:460717 17/52 (33%)
PDZ_CASK-like 494..574 CDD:467267 30/79 (38%)
SH3_CASK 586..646 CDD:213014 29/60 (48%)
Guanylate_kin 710..883 CDD:395500 81/212 (38%)
variNP_724288.3 L27 <105..128 CDD:460717 12/22 (55%)
PDZ_MPP6-MPP2-like 174..252 CDD:467268 30/79 (38%)
SH3_MPP 287..347 CDD:212796 29/59 (49%)
Guanylate_kin 408..622 CDD:395500 81/213 (38%)
Blue background indicates that the domain is not in the aligned region.

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