Protein Alignment Polr1H and RPB9

DIOPT Version :10

• Sequence 1: NP_524439.1
• Gene: Polr1H / 42563
• FlyBaseID: FBgn0038903
• Length: 120
• Species: Drosophila melanogaster
• Sequence 2: NP_011445.1
• Gene: RPB9 / 852810
• SGDID: S000003038
• Length: 122
• Species: Saccharomyces cerevisiae
• Alignment Length: 110
• Identity: 29/110 - (26%)
• Similarity: 47/110 - (42%)
• Gaps: 16/110 - (14%)

  Fly    10 FCPSCGSIL-PELQVKGNVICYNCK------KEFQPDVYSGEKSEFTIHFNTYDPSKVFNRTKRE 67
            ||..|.::| |....:.|.:.:.|:      :...|.||..|     :..|..:.:.|.    ::
Yeast     6 FCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSPLVYRHE-----LITNIGETAGVV----QD 61

  Fly    68 SESDADGPVVERKCPKCNHDKMSYATLQLRSADEGQTVFFTCLKC 112
            ..||...|..:|:||||:..:..:...|.|..|....:||.||.|
Yeast    62 IGSDPTLPRSDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSC 106

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Polr1H	NP_524439.1	RPB9	10..115	CDD:441202	29/110 (26%)
		Zn-ribbon_RPA12	73..119	CDD:259792	14/40 (35%)
RPB9	NP_011445.1	RPOL9	5..58	CDD:197822	12/56 (21%)
		Zn-ribbon_RPB9	64..111	CDD:259793	16/43 (37%)