Protein Alignment Polr1H and AT3G25940

DIOPT Version :10

• Sequence 1: NP_524439.1
• Gene: Polr1H / 42563
• FlyBaseID: FBgn0038903
• Length: 120
• Species: Drosophila melanogaster
• Sequence 2: NP_566786.1
• Gene: AT3G25940 / 822191
• AraportID: AT3G25940
• Length: 119
• Species: Arabidopsis thaliana
• Alignment Length: 109
• Identity: 31/109 - (28%)
• Similarity: 55/109 - (50%)
• Gaps: 1/109 - (0%)

  Fly    10 FCPSCGSILPELQVKGNVICYNCKKEFQPDVYSGEKSEFTIHFNTYDPSKVFNRTKRESESDADG 74
            ||..||::| .|:......|.:||..........::..:|:...........:....:::::|:.
plant    11 FCNLCGTML-VLKSTKYAECPHCKTTRNAKDIIDKEIAYTVSAEDIRRELGISLFGEKTQAEAEL 74

  Fly    75 PVVERKCPKCNHDKMSYATLQLRSADEGQTVFFTCLKCKFKESE 118
            |.:::.|.||.|.::.|.|.|.||||||||.::||..|..:.:|
plant    75 PKIKKACEKCQHPELVYTTRQTRSADEGQTTYYTCPNCAHRFTE 118

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Polr1H	NP_524439.1	RPB9	10..115	CDD:441202	30/104 (29%)
		Zn-ribbon_RPA12	73..119	CDD:259792	20/46 (43%)
AT3G25940	NP_566786.1	RPB9	11..115	CDD:441202	30/104 (29%)
		Zn-ribbon_RPA12	75..118	CDD:259792	19/42 (45%)