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Protein Alignment Polr1H and Polr3k

DIOPT Version :10

Sequence 1:	NP_524439.1	Gene:	Polr1H / 42563	FlyBaseID:	FBgn0038903	Length:	120	Species:	Drosophila melanogaster
Sequence 2:	NP_080177.1	Gene:	Polr3k / 67005	MGIID:	1914255	Length:	108	Species:	Mus musculus

Alignment Length:	112	Identity:	34/112 - (30%)
Similarity:	43/112 - (38%)	Gaps:	30/112 - (26%)

- Green bases have known domain annotations that are detailed below.

  Fly    10 FCPSCGS--ILPELQVKGNVICYNCKKEFQPDVYSGEKSEFTIHFNTYDPSKVFNR--TKRESES 70
            |||.||:  |:.|.|......|..|     |.|::..:             ||.||  .|.:...
Mouse     4 FCPGCGNGLIVEEGQRCHRFACNTC-----PYVHNITR-------------KVTNRKYPKLKEVD 50

  Fly    71 DADGPV--------VERKCPKCNHDKMSYATLQLRSADEGQTVFFTC 109
            |..|..        ....||||.|.:..:..||.|||||..|.|:.|
Mouse    51 DVLGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKC 97

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.