DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpI12 and AT1G20065

DIOPT Version :9

Sequence 1:NP_524439.1 Gene:RpI12 / 42563 FlyBaseID:FBgn0038903 Length:120 Species:Drosophila melanogaster
Sequence 2:NP_001185044.1 Gene:AT1G20065 / 5007707 AraportID:AT1G20065 Length:91 Species:Arabidopsis thaliana


Alignment Length:9 Identity:5/9 - (55%)
Similarity:7/9 - (77%) Gaps:0/9 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 FCPSCGSIL 18
            ||..||::|
plant    11 FCNLCGTML 19

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpI12NP_524439.1 RPB9 10..119 CDD:224510 5/9 (56%)
Zn-ribbon_RPA12 73..119 CDD:259792
AT1G20065NP_001185044.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1456544at2759
OrthoFinder 1 1.000 - - FOG0003996
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2760
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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