Protein Alignment Polr1H and polr2i

DIOPT Version :10

• Sequence 1: NP_524439.1
• Gene: Polr1H / 42563
• FlyBaseID: FBgn0038903
• Length: 120
• Species: Drosophila melanogaster
• Sequence 2: NP_001006013.2
• Gene: polr2i / 449992
• ZFINID: ZDB-GENE-041010-106
• Length: 126
• Species: Danio rerio
• Alignment Length: 118
• Identity: 28/118 - (23%)
• Similarity: 44/118 - (37%)
• Gaps: 28/118 - (23%)

  Fly     8 PG-----FCPSCGSILPELQVKGNVI----CYNCKKEFQPDVYSGEKSEFTIHFNTYDPSKVFNR 63
            ||     ||..|.::|...:.|.|.|    |.||.       |..|.....|:.|     |:.:.
Zfish    10 PGFVGIRFCQECNNMLYPKEDKENRILLYACRNCD-------YQQEADNSCIYVN-----KITHE 62

  Fly    64 TKRESESDAD---GPVVER----KCPKCNHDKMSYATLQLRSADEGQTVFFTC 109
            ....::..||   .|.:.|    .||||.|.:..:.......|::...:::.|
Zfish    63 VDELTQIIADVAQDPTLPRTEDHPCPKCGHKEAVFFQSHSMKAEDAMRLYYVC 115

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Polr1H	NP_524439.1	RPB9	10..115	CDD:441202	26/111 (23%)
		Zn-ribbon_RPA12	73..119	CDD:259792	10/44 (23%)
polr2i	NP_001006013.2	RPOL9	16..69	CDD:197822	15/64 (23%)
		Zn-ribbon_RPB9	75..125	CDD:259793	9/41 (22%)