Protein Alignment Polr1H and polr3k

DIOPT Version :10

• Sequence 1: NP_524439.1
• Gene: Polr1H / 42563
• FlyBaseID: FBgn0038903
• Length: 120
• Species: Drosophila melanogaster
• Sequence 2: NP_001002553.1
• Gene: polr3k / 436826
• ZFINID: ZDB-GENE-040718-291
• Length: 108
• Species: Danio rerio
• Alignment Length: 117
• Identity: 34/117 - (29%)
• Similarity: 47/117 - (40%)
• Gaps: 32/117 - (27%)

  Fly    10 FCPSCGSIL--PELQVKGNVICYNCKKEFQPDVYSGEKSEFTIHFNTYDPSKVFNR--TKRESES 70
            |||:||::|  .|.|......|..|     |.|::..:             ||.||  .|.:...
Zfish     4 FCPTCGNVLIVEEGQRCFRFACNTC-----PYVHNITR-------------KVNNRKYPKLKEVD 50

  Fly    71 DADG--------PVVERKCPKCNHDKMSYATLQLRSADEGQTVFFTC--LKC 112
            |..|        ......||||.|.:..:..:|.|||||..|.|:.|  ::|
Zfish    51 DVLGGSAAWENVDSTAEPCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIQC 102

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Polr1H	NP_524439.1	RPB9	10..115	CDD:441202	34/117 (29%)
		Zn-ribbon_RPA12	73..119	CDD:259792	16/50 (32%)
polr3k	NP_001002553.1	RPB9	4..107	CDD:441202	34/117 (29%)
		Zn-ribbon_RPC11	61..108	CDD:259794	15/42 (36%)