DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpI12 and tcea2

DIOPT Version :9

Sequence 1:NP_524439.1 Gene:RpI12 / 42563 FlyBaseID:FBgn0038903 Length:120 Species:Drosophila melanogaster
Sequence 2:NP_957280.2 Gene:tcea2 / 393961 ZFINID:ZDB-GENE-040426-985 Length:301 Species:Danio rerio


Alignment Length:99 Identity:26/99 - (26%)
Similarity:39/99 - (39%) Gaps:16/99 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 CGSILPELQVKGNVICYNCKKEFQPDVYSGEKSEFTIHFNTYDPSKVFNRTKRESESDADGPVVE 78
            ||:|.||     .:.....::...|::....|:........:..|||..     :|:|.      
Zfish   212 CGNISPE-----RIASMTAEEMASPELKEIRKALTKESIREHQLSKVGG-----TETDM------ 260

  Fly    79 RKCPKCNHDKMSYATLQLRSADEGQTVFFTCLKC 112
            ..|.||.....:|..:|.|||||..|.|..|.:|
Zfish   261 FVCGKCKGKNCTYTQVQTRSADEPMTTFVLCNEC 294

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpI12NP_524439.1 RPB9 10..119 CDD:224510 26/99 (26%)
Zn-ribbon_RPA12 73..119 CDD:259792 14/40 (35%)
tcea2NP_957280.2 TFIIS_I 5..80 CDD:238107
TFSII 6..301 CDD:273592 26/99 (26%)
TFIIS_M 138..245 CDD:284835 7/37 (19%)
Zn-ribbon_TFIIS 254..300 CDD:259796 16/52 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1594
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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