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Protein Alignment Polr1H and Polr1h

DIOPT Version :10

Sequence 1:	NP_524439.1	Gene:	Polr1H / 42563	FlyBaseID:	FBgn0038903	Length:	120	Species:	Drosophila melanogaster
Sequence 2:	NP_998732.1	Gene:	Polr1h / 361784	RGDID:	1303114	Length:	123	Species:	Rattus norvegicus

Alignment Length:	116	Identity:	52/116 - (44%)
Similarity:	72/116 - (62%)	Gaps:	13/116 - (11%)

- Green bases have known domain annotations that are detailed below.

  Fly    10 FCPSCGSILPELQVKGNVICYNCKKEFQPDV--YSGEKSEFTIHFN---TYDPSKVFNRTKRESE 69
            |||.|||:||...|:..|||..|  .|..||  :.|:..:.::.||   |..|..|      :..
  Rat    16 FCPDCGSVLPLPGVQDTVICPRC--GFSIDVRDFGGKVVKTSVVFNKLGTVIPMSV------DEG 72

  Fly    70 SDADGPVVERKCPKCNHDKMSYATLQLRSADEGQTVFFTCLKCKFKESENS 120
            .::.||||:|:|.:|.|:.|:|.|.|:||||||||||:||:.|||:|.|:|
  Rat    73 PESQGPVVDRRCSRCGHEGMAYYTRQMRSADEGQTVFYTCINCKFQEKEDS 123

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.